Uses of Class
uk.ac.vamsas.objects.core.VAMSAS

Packages that use VAMSAS
uk.ac.vamsas.client   
uk.ac.vamsas.client.simpleclient   
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
uk.ac.vamsas.test.objects   
uk.ac.vamsas.test.simpleclient   
 

Uses of VAMSAS in uk.ac.vamsas.client
 

Methods in uk.ac.vamsas.client that return VAMSAS
 VAMSAS[] IClientDocument.getVamsasRoots()
          Returns all root objects in document.
 

Methods in uk.ac.vamsas.client with parameters of type VAMSAS
 void IClientDocument.setVamsasRoots(VAMSAS[] roots)
          set the VAMSAS roots in the document TODO: decide if objects are verified for provenance and VorbaIds by this call or when document is stored TODO: decide if this call should throw InvalidVamsasObject exceptions.
 void IClientDocument.addVamsasRoot(VAMSAS newroot)
          Adds a new VAMSAS root entry TODO: decide on same InvalidVamsasObject exceptions.
 

Uses of VAMSAS in uk.ac.vamsas.client.simpleclient
 

Methods in uk.ac.vamsas.client.simpleclient that return VAMSAS
 VAMSAS[] ClientDocument.getVamsasRoots()
           
 

Methods in uk.ac.vamsas.client.simpleclient with parameters of type VAMSAS
 void ClientDocument.setVamsasRoots(VAMSAS[] newroots)
          update the document with new roots.
 void ClientDocument.addVamsasRoot(VAMSAS newroot)
           
 

Uses of VAMSAS in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type VAMSAS
 void EmptyDocumentUpdater.update(VAMSAS vobj)
           
 void IDocumentUpdater.update(VAMSAS vobj)
           
 

Uses of VAMSAS in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return VAMSAS
static VAMSAS VAMSAS.unmarshal(java.io.Reader reader)
          Method unmarshal.
 VAMSAS VamsasDocument.getVAMSAS(int index)
          Method getVAMSAS.
 VAMSAS[] VamsasDocument.getVAMSAS()
          Method getVAMSAS.Returns the contents of the collection in an Array.
 VAMSAS VamsasDocument.removeVAMSASAt(int index)
          Method removeVAMSASAt.
 

Methods in uk.ac.vamsas.objects.core with parameters of type VAMSAS
 void VamsasDocument.addVAMSAS(VAMSAS vVAMSAS)
           
 void VamsasDocument.addVAMSAS(int index, VAMSAS vVAMSAS)
           
 boolean VamsasDocument.removeVAMSAS(VAMSAS vVAMSAS)
          Method removeVAMSAS.
 void VamsasDocument.setVAMSAS(int index, VAMSAS vVAMSAS)
           
 void VamsasDocument.setVAMSAS(VAMSAS[] vVAMSASArray)
           
 

Uses of VAMSAS in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils with parameters of type VAMSAS
static VamsasDocument DocumentStuff.newVamsasDocument(VAMSAS[] root, java.lang.String version)
           
static VamsasDocument DocumentStuff.newVamsasDocument(VAMSAS[] root)
           
static VamsasDocument DocumentStuff.newVamsasDocument(VAMSAS[] root, Provenance p, java.lang.String version)
           
 

Uses of VAMSAS in uk.ac.vamsas.test.objects
 

Methods in uk.ac.vamsas.test.objects that return VAMSAS
static VAMSAS Core.getDemoVamsas()
           
 

Uses of VAMSAS in uk.ac.vamsas.test.simpleclient
 

Fields in uk.ac.vamsas.test.simpleclient declared as VAMSAS
 VAMSAS[] ClientDoc._VamsasRoots
           
 

Methods in uk.ac.vamsas.test.simpleclient that return VAMSAS
 VAMSAS[] ClientDoc.getVamsasRoots()
           
 

Methods in uk.ac.vamsas.test.simpleclient with parameters of type VAMSAS
static boolean ArchiveReports.rootReport(VAMSAS[] roots, boolean cascade, java.io.PrintStream outstr)
          summarises all the datasets in a vamsas document.
 void ClientDoc.setVamsasRoots(VAMSAS[] newroots)
          update the document with new roots.
 void ClientDoc.addVamsasRoot(VAMSAS newroot)