Uses of Class
uk.ac.vamsas.objects.core.SequenceType

Packages that use SequenceType
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
 

Uses of SequenceType in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type SequenceType
 void EmptyDocumentUpdater.update(SequenceType vobj)
           
 void IDocumentUpdater.update(SequenceType vobj)
           
 

Uses of SequenceType in uk.ac.vamsas.objects.core
 

Subclasses of SequenceType in uk.ac.vamsas.objects.core
 class AlignmentSequence
          Class AlignmentSequence.
 class Sequence
          Class Sequence.
 

Methods in uk.ac.vamsas.objects.core that return SequenceType
static SequenceType AlignmentSequence.unmarshal(java.io.Reader reader)
          Method unmarshal.
static SequenceType Sequence.unmarshal(java.io.Reader reader)
          Method unmarshal.
static SequenceType SequenceType.unmarshal(java.io.Reader reader)
          Method unmarshal.
 

Uses of SequenceType in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils with parameters of type SequenceType
static void Seq.write_PirSeq(java.io.OutputStream os, SequenceType seq, int wid)
           
static void Seq.write_FastaSeq(java.io.OutputStream os, SequenceType seq)
           
static void Seq.write_FastaSeq(java.io.OutputStream os, SequenceType seq, int wid)
           
static boolean Seq.is_valid_aa_seq(SequenceType s)
           
static void SeqSet.write_Fasta(java.io.OutputStream os, SequenceType[] seqs)
           
static void SeqSet.write_Fasta(java.io.OutputStream os, SequenceType[] seqs, boolean width80)
           
static void SeqSet.write_Fasta(java.io.OutputStream os, SequenceType[] seqs, int width)
           
static java.util.Hashtable SeqSet.uniquify(SequenceType[] sequences)
           
static boolean SeqSet.deuniquify(java.util.Hashtable map, SequenceType[] sequences)