Uses of Class
uk.ac.vamsas.objects.core.Provenance

Packages that use Provenance
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
uk.ac.vamsas.test.simpleclient   
 

Uses of Provenance in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type Provenance
 void EmptyDocumentUpdater.update(Provenance vobj)
           
 void IDocumentUpdater.update(Provenance vobj)
           
 

Uses of Provenance in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return Provenance
 Provenance Alignment.getProvenance()
          Returns the value of field 'provenance'.
 Provenance AlignmentAnnotation.getProvenance()
          Returns the value of field 'provenance'.
 Provenance AlignmentSequenceAnnotation.getProvenance()
          Returns the value of field 'provenance'.
 Provenance DataSet.getProvenance()
          Returns the value of field 'provenance'.
 Provenance DataSetAnnotations.getProvenance()
          Returns the value of field 'provenance'.
static Provenance Provenance.unmarshal(java.io.Reader reader)
          Method unmarshal.
 Provenance SequenceMapping.getProvenance()
          Returns the value of field 'provenance'.
 Provenance Tree.getProvenance()
          Returns the value of field 'provenance'.
 Provenance VamsasDocument.getProvenance()
          Returns the value of field 'provenance'.
 

Methods in uk.ac.vamsas.objects.core with parameters of type Provenance
 void Alignment.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void AlignmentAnnotation.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void AlignmentSequenceAnnotation.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void DataSet.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void DataSetAnnotations.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void SequenceMapping.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void Tree.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 void VamsasDocument.setProvenance(Provenance provenance)
          Sets the value of field 'provenance'.
 

Uses of Provenance in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils that return Provenance
static Provenance ProvenanceStuff.newProvenance(Entry entry)
           
static Provenance ProvenanceStuff.newProvenance(java.lang.String user, java.lang.String action)
           
static Provenance ProvenanceStuff.newProvenance(java.lang.String app, java.lang.String user, java.lang.String action)
           
 

Methods in uk.ac.vamsas.objects.utils with parameters of type Provenance
static VamsasDocument DocumentStuff.newVamsasDocument(VAMSAS[] root, Provenance p, java.lang.String version)
           
 

Uses of Provenance in uk.ac.vamsas.test.simpleclient
 

Methods in uk.ac.vamsas.test.simpleclient with parameters of type Provenance
static boolean ArchiveReports.reportProvenance(Provenance p, java.io.PrintStream outstr)
          print an informative summary on a VamsasDocument