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Packages that use Provenance | |
uk.ac.vamsas.objects | |
uk.ac.vamsas.objects.core | |
uk.ac.vamsas.objects.utils | |
uk.ac.vamsas.test.simpleclient |
Uses of Provenance in uk.ac.vamsas.objects |
Methods in uk.ac.vamsas.objects with parameters of type Provenance | |
void |
EmptyDocumentUpdater.update(Provenance vobj)
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void |
IDocumentUpdater.update(Provenance vobj)
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Uses of Provenance in uk.ac.vamsas.objects.core |
Methods in uk.ac.vamsas.objects.core that return Provenance | |
Provenance |
Alignment.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
AlignmentAnnotation.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
AlignmentSequenceAnnotation.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
DataSet.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
DataSetAnnotations.getProvenance()
Returns the value of field 'provenance'. |
static Provenance |
Provenance.unmarshal(java.io.Reader reader)
Method unmarshal. |
Provenance |
SequenceMapping.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
Tree.getProvenance()
Returns the value of field 'provenance'. |
Provenance |
VamsasDocument.getProvenance()
Returns the value of field 'provenance'. |
Methods in uk.ac.vamsas.objects.core with parameters of type Provenance | |
void |
Alignment.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
AlignmentAnnotation.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
AlignmentSequenceAnnotation.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
DataSet.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
DataSetAnnotations.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
SequenceMapping.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
Tree.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
void |
VamsasDocument.setProvenance(Provenance provenance)
Sets the value of field 'provenance'. |
Uses of Provenance in uk.ac.vamsas.objects.utils |
Methods in uk.ac.vamsas.objects.utils that return Provenance | |
static Provenance |
ProvenanceStuff.newProvenance(Entry entry)
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static Provenance |
ProvenanceStuff.newProvenance(java.lang.String user,
java.lang.String action)
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static Provenance |
ProvenanceStuff.newProvenance(java.lang.String app,
java.lang.String user,
java.lang.String action)
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Methods in uk.ac.vamsas.objects.utils with parameters of type Provenance | |
static VamsasDocument |
DocumentStuff.newVamsasDocument(VAMSAS[] root,
Provenance p,
java.lang.String version)
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Uses of Provenance in uk.ac.vamsas.test.simpleclient |
Methods in uk.ac.vamsas.test.simpleclient with parameters of type Provenance | |
static boolean |
ArchiveReports.reportProvenance(Provenance p,
java.io.PrintStream outstr)
print an informative summary on a VamsasDocument |
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