Uses of Class
uk.ac.vamsas.objects.core.Treenode

Packages that use Treenode
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils.trees   
 

Uses of Treenode in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return Treenode
 Treenode Tree.getTreenode(int index)
          Method getTreenode.
 Treenode[] Tree.getTreenode()
          Method getTreenode.Returns the contents of the collection in an Array.
 Treenode Tree.removeTreenodeAt(int index)
          Method removeTreenodeAt.
 

Methods in uk.ac.vamsas.objects.core with parameters of type Treenode
 void Tree.addTreenode(Treenode vTreenode)
           
 void Tree.addTreenode(int index, Treenode vTreenode)
           
 boolean Tree.removeTreenode(Treenode vTreenode)
          Method removeTreenode.
 void Tree.setTreenode(int index, Treenode vTreenode)
           
 void Tree.setTreenode(Treenode[] vTreenodeArray)
           
 

Uses of Treenode in uk.ac.vamsas.objects.utils.trees
 

Methods in uk.ac.vamsas.objects.utils.trees that return Treenode
 Treenode[] NewickFile.matchTreeNodeNames(java.lang.String[] names, Vobject[] boundObjects)
           
 Treenode[] NewickFile.makeTreeNodes()
          make tree node vector from a newick tree structure with associated vamsas objects
 Treenode[] NewickFile.makeTreeNodes(boolean ignoreplaceholders)
          make treenode vector for a parsed tree with/out leaf node associations
 

Methods in uk.ac.vamsas.objects.utils.trees with parameters of type Treenode
 java.util.Vector NewickFile.attachTreeMap(Treenode[] tn)
          re-decorate the newick node representation with the VorbaId of an object mapped by its corresponding TreeNode.