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Hierarchy For All Packages
Package Hierarchies:
org.apache.tools.zip
,
uk.ac.vamsas.client
,
uk.ac.vamsas.client.picking
,
uk.ac.vamsas.client.simpleclient
,
uk.ac.vamsas.objects
,
uk.ac.vamsas.objects.core
,
uk.ac.vamsas.objects.core.descriptors
,
uk.ac.vamsas.objects.utils
,
uk.ac.vamsas.objects.utils.document
,
uk.ac.vamsas.objects.utils.trees
,
uk.ac.vamsas.test
,
uk.ac.vamsas.test.objects
,
uk.ac.vamsas.test.simpleclient
,
uk.ac.vamsas.test.simpleclient.simpleapp
Class Hierarchy
class java.lang.Object
class uk.ac.vamsas.objects.utils.
AppDataReference
class uk.ac.vamsas.test.simpleclient.
ArchiveReader
class uk.ac.vamsas.test.simpleclient.
ArchiveReports
class uk.ac.vamsas.test.simpleclient.
ArchiveStreamReader
class uk.ac.vamsas.test.simpleclient.
ArchiveWatcher
class uk.ac.vamsas.test.simpleclient.
ArchiveWriter
class org.apache.tools.zip.
AsiExtraField
(implements java.lang.Cloneable, org.apache.tools.zip.
UnixStat
, org.apache.tools.zip.
ZipExtraField
)
class uk.ac.vamsas.objects.utils.trees.
BinaryNode
class uk.ac.vamsas.objects.utils.trees.
SequenceNode
class uk.ac.vamsas.client.
ClientDocument
(implements uk.ac.vamsas.client.
IClientDocument
)
class uk.ac.vamsas.test.simpleclient.
ClientDoc
class uk.ac.vamsas.client.simpleclient.
ClientDocument
(implements uk.ac.vamsas.client.
IClientDocument
)
class uk.ac.vamsas.client.
ClientHandle
(implements java.io.Serializable)
class uk.ac.vamsas.test.simpleclient.
ClientsFileTest
class uk.ac.vamsas.test.simpleclient.
CommandProcessor
class uk.ac.vamsas.test.objects.
Core
class uk.ac.vamsas.objects.utils.
DocumentStuff
class uk.ac.vamsas.objects.
DocumentUpdaterEngine
class uk.ac.vamsas.objects.
EmptyDocumentUpdater
(implements uk.ac.vamsas.objects.
IDocumentUpdater
)
class uk.ac.vamsas.client.simpleclient.
EventGeneratorThread
class uk.ac.vamsas.client.
Events
class uk.ac.vamsas.test.
ExampleApplication
class org.apache.tools.zip.
ExtraFieldUtils
class uk.ac.vamsas.client.simpleclient.
FileWatcher
class uk.ac.vamsas.objects.utils.
Format
class uk.ac.vamsas.objects.utils.
GlyphDictionary
class java.io.InputStream
class java.io.FilterInputStream
class java.io.DataInputStream (implements java.io.DataInput)
class uk.ac.vamsas.client.
AppDataInputStream
(implements java.io.DataInput)
class org.apache.tools.zip.
JarMarker
(implements org.apache.tools.zip.
ZipExtraField
)
class uk.ac.vamsas.client.simpleclient.
Lock
class uk.ac.vamsas.client.simpleclient.
FileLock
class uk.ac.vamsas.client.simpleclient.
NativeLock
class uk.ac.vamsas.client.simpleclient.
LockFactory
class uk.ac.vamsas.objects.utils.
MapList
class uk.ac.vamsas.objects.utils.
Mapping
class uk.ac.vamsas.client.picking.
Message
class uk.ac.vamsas.client.picking.
CustomMessage
class uk.ac.vamsas.client.picking.
MouseOverMessage
class uk.ac.vamsas.client.picking.
SelectionMessage
class uk.ac.vamsas.objects.utils.trees.
NewickFile
class java.io.OutputStream
class java.io.FileOutputStream
class uk.ac.vamsas.client.simpleclient.
LockedFileOutputStream
class java.io.FilterOutputStream
class java.io.DataOutputStream (implements java.io.DataOutput)
class uk.ac.vamsas.client.
AppDataOutputStream
class org.apache.tools.zip.
ZipOutputStream
class uk.ac.vamsas.objects.utils.
Properties
class uk.ac.vamsas.objects.utils.
ProvenanceStuff
class uk.ac.vamsas.objects.utils.
Range
class uk.ac.vamsas.objects.utils.
Seq
class uk.ac.vamsas.objects.utils.
SeqSet
class uk.ac.vamsas.client.simpleclient.
SessionFile
class uk.ac.vamsas.client.simpleclient.
ListFile
class uk.ac.vamsas.client.simpleclient.
ClientsFile
class uk.ac.vamsas.client.simpleclient.
SessionsFile
class uk.ac.vamsas.client.simpleclient.
VamsasFile
class uk.ac.vamsas.client.simpleclient.
SessionFlagFile
class uk.ac.vamsas.client.
SessionHandle
(implements java.io.Serializable)
class uk.ac.vamsas.client.
SessionUrn
class uk.ac.vamsas.client.simpleclient.
ArchiveUrn
class uk.ac.vamsas.client.simpleclient.
SessionUrn
class uk.ac.vamsas.client.simpleclient.
SimpleClient
(implements uk.ac.vamsas.client.
IClient
)
class uk.ac.vamsas.client.simpleclient.
SimpleClientAppdata
(implements uk.ac.vamsas.client.
IClientAppdata
)
class uk.ac.vamsas.client.simpleclient.
SimpleClientConfig
class uk.ac.vamsas.client.simpleclient.
SimpleClientFactory
(implements uk.ac.vamsas.client.
IClientFactory
)
class uk.ac.vamsas.client.simpleclient.
SimpleDocBinding
class uk.ac.vamsas.client.simpleclient.
SimpleDocument
class uk.ac.vamsas.client.simpleclient.
SimplePickManager
(implements uk.ac.vamsas.client.picking.
IPickManager
)
class uk.ac.vamsas.client.simpleclient.
SimpleSessionManager
class uk.ac.vamsas.client.picking.
SocketManager
(implements uk.ac.vamsas.client.picking.
IPickManager
)
class uk.ac.vamsas.objects.utils.
SymbolDictionary
class uk.ac.vamsas.client.picking.
TestApp
(implements uk.ac.vamsas.client.picking.
IMessageHandler
)
class uk.ac.vamsas.test.simpleclient.
TestSessionURN
class java.lang.Thread (implements java.lang.Runnable)
class uk.ac.vamsas.test.simpleclient.simpleapp.
VamsasClient.VamsasClientWatcher
(implements java.lang.Runnable)
class uk.ac.vamsas.client.simpleclient.
VamsasFileWatcherThread
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class uk.ac.vamsas.client.
InvalidSessionDocumentException
class uk.ac.vamsas.client.
InvalidSessionUrnException
class uk.ac.vamsas.client.simpleclient.
LockTimeoutException
class uk.ac.vamsas.client.
NoDefaultSessionException
class uk.ac.vamsas.objects.utils.
Trees
class org.apache.tools.zip.
UnrecognizedExtraField
(implements org.apache.tools.zip.
ZipExtraField
)
class uk.ac.vamsas.client.
UserHandle
class org.exolab.castor.xml.Validator (implements org.exolab.castor.xml.ClassValidator)
class org.exolab.castor.xml.util.XMLClassDescriptorImpl (implements org.exolab.castor.xml.XMLClassDescriptor)
class uk.ac.vamsas.objects.core.descriptors.
AlignmentDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AnnotationElementDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AppDataDescriptor
class uk.ac.vamsas.objects.core.descriptors.
ApplicationDataDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AttachmentDescriptor
class uk.ac.vamsas.objects.core.descriptors.
CommonDescriptor
class uk.ac.vamsas.objects.core.descriptors.
InstanceDescriptor
class uk.ac.vamsas.objects.core.descriptors.
UserDescriptor
class uk.ac.vamsas.objects.core.descriptors.
DataSetDescriptor
class uk.ac.vamsas.objects.core.descriptors.
DbRefDescriptor
class uk.ac.vamsas.objects.core.descriptors.
EntryDescriptor
class uk.ac.vamsas.objects.core.descriptors.
GlyphDescriptor
class uk.ac.vamsas.objects.core.descriptors.
LinkDescriptor
class uk.ac.vamsas.objects.core.descriptors.
LockFileDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MapListDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MappingDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MapTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MapDescriptor
class uk.ac.vamsas.objects.core.descriptors.
SequenceMappingDescriptor
class uk.ac.vamsas.objects.core.descriptors.
NewickDescriptor
class uk.ac.vamsas.objects.core.descriptors.
NodeTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
TreenodeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
ParamDescriptor
class uk.ac.vamsas.objects.core.descriptors.
PosDescriptor
class uk.ac.vamsas.objects.core.descriptors.
PropertyDescriptor
class uk.ac.vamsas.objects.core.descriptors.
ProvenanceDescriptor
class uk.ac.vamsas.objects.core.descriptors.
RangeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
RangeTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
InputDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MapRangeTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
LocalDescriptor
class uk.ac.vamsas.objects.core.descriptors.
MappedDescriptor
class uk.ac.vamsas.objects.core.descriptors.
RangeAnnotationDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AlignmentAnnotationDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AlignmentSequenceAnnotationDescriptor
class uk.ac.vamsas.objects.core.descriptors.
DataSetAnnotationsDescriptor
class uk.ac.vamsas.objects.core.descriptors.
ReferenceTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
VrefDescriptor
class uk.ac.vamsas.objects.core.descriptors.
VxrefDescriptor
class uk.ac.vamsas.objects.core.descriptors.
ScoreDescriptor
class uk.ac.vamsas.objects.core.descriptors.
SegDescriptor
class uk.ac.vamsas.objects.core.descriptors.
SequenceTypeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
AlignmentSequenceDescriptor
class uk.ac.vamsas.objects.core.descriptors.
SequenceDescriptor
class uk.ac.vamsas.objects.core.descriptors.
TreeDescriptor
class uk.ac.vamsas.objects.core.descriptors.
VAMSASDescriptor
class uk.ac.vamsas.objects.core.descriptors.
VamsasDocumentDescriptor
class uk.ac.vamsas.client.simpleclient.
VamsasArchive
class uk.ac.vamsas.test.simpleclient.
VamsasArchive
class uk.ac.vamsas.client.simpleclient.
VamsasArchiveReader
class uk.ac.vamsas.test.simpleclient.simpleapp.
VamsasDatastore
class uk.ac.vamsas.client.simpleclient.
VamsasSession
class uk.ac.vamsas.objects.utils.document.
VersionEntries
class uk.ac.vamsas.client.
Vobject
class uk.ac.vamsas.objects.core.
Alignment
(implements java.io.Serializable)
class uk.ac.vamsas.objects.utils.
SeqAln
class uk.ac.vamsas.objects.core.
AnnotationElement
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
AppData
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
ApplicationData
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Attachment
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Common
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Instance
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
User
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
DataSet
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
DbRef
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Entry
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Glyph
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Link
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
LockFile
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
MapList
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Mapping
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
MapType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Map
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
SequenceMapping
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Newick
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
NodeType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Treenode
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Param
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Pos
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Property
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Provenance
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Range
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
RangeType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Input
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
MapRangeType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Local
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Mapped
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
RangeAnnotation
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
AlignmentAnnotation
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
AlignmentSequenceAnnotation
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
DataSetAnnotations
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
ReferenceType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Vref
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Vxref
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Score
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Seg
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
SequenceType
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
AlignmentSequence
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Sequence
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
Tree
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
VAMSAS
(implements java.io.Serializable)
class uk.ac.vamsas.objects.core.
VamsasDocument
(implements java.io.Serializable)
class uk.ac.vamsas.client.
Vobjhash
class uk.ac.vamsas.client.
VorbaId
(implements java.io.Serializable)
class uk.ac.vamsas.client.
VorbaIdFactory
(implements uk.ac.vamsas.client.
IVorbaIdFactory
)
class uk.ac.vamsas.client.simpleclient.
IdFactory
class uk.ac.vamsas.test.simpleclient.
ArchiveClient
class uk.ac.vamsas.test.simpleclient.simpleapp.
VamsasClient
class uk.ac.vamsas.client.
VorbaXmlBinder
(implements org.exolab.castor.xml.UnmarshalListener)
class uk.ac.vamsas.client.simpleclient.
WatcherElement
class uk.ac.vamsas.client.simpleclient.
SessionFileWatcherElement
class uk.ac.vamsas.client.simpleclient.
ClientSessionFileWatcherElement
class uk.ac.vamsas.client.simpleclient.
SessionFlagWatcherElement
class uk.ac.vamsas.client.simpleclient.
VamsasFileWatcherElement
class java.util.zip.ZipEntry (implements java.lang.Cloneable, java.util.zip.ZipConstants)
class org.apache.tools.zip.
ZipEntry
(implements java.lang.Cloneable)
class org.apache.tools.zip.
ZipFile
class org.apache.tools.zip.
ZipLong
(implements java.lang.Cloneable)
class org.apache.tools.zip.
ZipShort
(implements java.lang.Cloneable)
class uk.ac.vamsas.test.simpleclient.
ZipTest
Interface Hierarchy
interface uk.ac.vamsas.client.
Iapp
interface uk.ac.vamsas.client.
IClient
interface uk.ac.vamsas.client.
IClientAppdata
interface uk.ac.vamsas.client.
IClientDocument
interface uk.ac.vamsas.client.
IClientFactory
interface uk.ac.vamsas.objects.
IDocumentUpdater
interface uk.ac.vamsas.client.picking.
IMessageHandler
interface uk.ac.vamsas.client.
IObjectUpdate
interface uk.ac.vamsas.client.picking.
IPickManager
interface uk.ac.vamsas.objects.
IVorbaBinding
interface uk.ac.vamsas.client.
IVorbaIdFactory
interface org.apache.tools.zip.
UnixStat
interface uk.ac.vamsas.client.simpleclient.
WatcherCallBack
interface org.apache.tools.zip.
ZipExtraField
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV NEXT
FRAMES
NO FRAMES
All Classes