Uses of Class
uk.ac.vamsas.objects.core.RangeType

Packages that use RangeType
uk.ac.vamsas.client.picking   
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
 

Uses of RangeType in uk.ac.vamsas.client.picking
 

Methods in uk.ac.vamsas.client.picking that return RangeType
 RangeType SelectionMessage.getRanges()
           
 

Constructors in uk.ac.vamsas.client.picking with parameters of type RangeType
SelectionMessage(java.lang.String selectionID, java.lang.String[] vorbaIDs, RangeType ranges)
          create a new selection message
SelectionMessage(java.lang.String selectionID, java.lang.String[] vorbaIDs, RangeType ranges, boolean none)
           
 

Uses of RangeType in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type RangeType
 void EmptyDocumentUpdater.update(RangeType vobj)
           
 void IDocumentUpdater.update(RangeType vobj)
           
 

Uses of RangeType in uk.ac.vamsas.objects.core
 

Subclasses of RangeType in uk.ac.vamsas.objects.core
 class AlignmentAnnotation
          This is annotation over the coordinate frame defined by all the columns in the alignment.
 class AlignmentSequenceAnnotation
          Class AlignmentSequenceAnnotation.
 class DataSetAnnotations
          Class DataSetAnnotations.
 class Input
          Class Input.
 class Local
           
 class Mapped
           
 class MapRangeType
          Class MapRangeType.
 class RangeAnnotation
          Annotation for a rangeSpec - values can be attached for the whole specification, and to each position within the spec.
 

Methods in uk.ac.vamsas.objects.core that return RangeType
static RangeType AlignmentAnnotation.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType AlignmentSequenceAnnotation.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType DataSetAnnotations.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType Input.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType Local.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType MapRangeType.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType Mapped.unmarshal(java.io.Reader reader)
          Method unmarshal.
static RangeType RangeAnnotation.unmarshal(java.io.Reader reader)
          Method unmarshal.
 

Uses of RangeType in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils with parameters of type RangeType
static int[] Range.getBounds(RangeType dseta)
          get real bounds of a RangeType's specification.
static int[] Range.getMapping(RangeType dseta)
          map from a rangeType's internal frame to the referenced object's coordinate frame.
static int[] Range.getIntervals(RangeType range)
           
static void Range.initRangeType(RangeType mrt, int[] range)
          initialise a range type object from a set of start/end inclusive intervals