Uses of Class
uk.ac.vamsas.objects.utils.trees.SequenceNode

Packages that use SequenceNode
uk.ac.vamsas.objects.utils.trees   
 

Uses of SequenceNode in uk.ac.vamsas.objects.utils.trees
 

Methods in uk.ac.vamsas.objects.utils.trees that return SequenceNode
 SequenceNode NewickFile.getTree()
          DOCUMENT ME!
 SequenceNode SequenceNode.AscendTree()
          ascends the tree but doesn't stop until a non-dummy node is discovered.
 

Methods in uk.ac.vamsas.objects.utils.trees with parameters of type SequenceNode
 void NewickFile.print(java.lang.StringBuffer tf, SequenceNode root)
           
 void NewickFile._print(java.lang.StringBuffer tf, SequenceNode c)
           
 java.util.Vector NewickFile.findLeaves(SequenceNode node, java.util.Vector leaves)
          Search for leaf nodes.
 

Constructors in uk.ac.vamsas.objects.utils.trees with parameters of type SequenceNode
NewickFile(SequenceNode newtree)
          Creates a new NewickFile object.
NewickFile(SequenceNode newtree, boolean bootstrap)
          Creates a new NewickFile object.
NewickFile(SequenceNode newtree, boolean bootstrap, boolean distances)
          Creates a new NewickFile object.
NewickFile(SequenceNode newtree, boolean bootstrap, boolean distances, boolean rootdistance)
          Creates a new NewickFile object.
SequenceNode(Vobject val, SequenceNode parent, float dist, java.lang.String name)
          Creates a new SequenceNode object.
SequenceNode(Vobject val, SequenceNode parent, java.lang.String name, float dist, int bootstrap, boolean dummy)
          Creates a new SequenceNode object.