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Packages that use SequenceNode | |
uk.ac.vamsas.objects.utils.trees |
Uses of SequenceNode in uk.ac.vamsas.objects.utils.trees |
Methods in uk.ac.vamsas.objects.utils.trees that return SequenceNode | |
SequenceNode |
NewickFile.getTree()
DOCUMENT ME! |
SequenceNode |
SequenceNode.AscendTree()
ascends the tree but doesn't stop until a non-dummy node is discovered. |
Methods in uk.ac.vamsas.objects.utils.trees with parameters of type SequenceNode | |
void |
NewickFile.print(java.lang.StringBuffer tf,
SequenceNode root)
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void |
NewickFile._print(java.lang.StringBuffer tf,
SequenceNode c)
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java.util.Vector |
NewickFile.findLeaves(SequenceNode node,
java.util.Vector leaves)
Search for leaf nodes. |
Constructors in uk.ac.vamsas.objects.utils.trees with parameters of type SequenceNode | |
NewickFile(SequenceNode newtree)
Creates a new NewickFile object. |
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NewickFile(SequenceNode newtree,
boolean bootstrap)
Creates a new NewickFile object. |
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NewickFile(SequenceNode newtree,
boolean bootstrap,
boolean distances)
Creates a new NewickFile object. |
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NewickFile(SequenceNode newtree,
boolean bootstrap,
boolean distances,
boolean rootdistance)
Creates a new NewickFile object. |
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SequenceNode(Vobject val,
SequenceNode parent,
float dist,
java.lang.String name)
Creates a new SequenceNode object. |
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SequenceNode(Vobject val,
SequenceNode parent,
java.lang.String name,
float dist,
int bootstrap,
boolean dummy)
Creates a new SequenceNode object. |
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