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Packages that use AlignmentSequence | |
uk.ac.vamsas.objects | |
uk.ac.vamsas.objects.core | |
uk.ac.vamsas.objects.utils |
Uses of AlignmentSequence in uk.ac.vamsas.objects |
Methods in uk.ac.vamsas.objects with parameters of type AlignmentSequence | |
void |
EmptyDocumentUpdater.update(AlignmentSequence vobj)
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void |
IDocumentUpdater.update(AlignmentSequence vobj)
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Uses of AlignmentSequence in uk.ac.vamsas.objects.core |
Methods in uk.ac.vamsas.objects.core that return AlignmentSequence | |
AlignmentSequence |
Alignment.getAlignmentSequence(int index)
Method getAlignmentSequence. |
AlignmentSequence[] |
Alignment.getAlignmentSequence()
Method getAlignmentSequence.Returns the contents of the collection in an Array. |
AlignmentSequence |
Alignment.removeAlignmentSequenceAt(int index)
Method removeAlignmentSequenceAt. |
Methods in uk.ac.vamsas.objects.core with parameters of type AlignmentSequence | |
void |
Alignment.addAlignmentSequence(AlignmentSequence vAlignmentSequence)
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void |
Alignment.addAlignmentSequence(int index,
AlignmentSequence vAlignmentSequence)
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boolean |
Alignment.removeAlignmentSequence(AlignmentSequence vAlignmentSequence)
Method removeAlignmentSequence. |
void |
Alignment.setAlignmentSequence(int index,
AlignmentSequence vAlignmentSequence)
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void |
Alignment.setAlignmentSequence(AlignmentSequence[] vAlignmentSequenceArray)
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Uses of AlignmentSequence in uk.ac.vamsas.objects.utils |
Methods in uk.ac.vamsas.objects.utils that return AlignmentSequence | |
static AlignmentSequence |
Seq.newAlignmentSequence(java.lang.String name,
java.lang.String alSequence,
Sequence refseq,
long start,
long end)
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