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Class uk.ac.vamsas.objects.core.Alignment extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _gapChar
boolean _aligned
boolean _has_aligned
java.lang.String _id
java.lang.String _modifiable
java.util.Vector _alignmentAnnotationList
java.util.Vector _treeList
java.util.Vector _alignmentSequenceList
java.util.Vector _propertyList
Provenance _provenance
Class uk.ac.vamsas.objects.core.AlignmentAnnotation extends RangeAnnotation implements Serializable |
Serialized Fields |
boolean _graph
boolean _has_graph
java.util.Vector _seqrefs
Provenance _provenance
Class uk.ac.vamsas.objects.core.AlignmentSequence extends SequenceType implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.Object _refid
java.util.Vector _alignmentSequenceAnnotationList
Class uk.ac.vamsas.objects.core.AlignmentSequenceAnnotation extends RangeAnnotation implements Serializable |
Serialized Fields |
boolean _graph
boolean _has_graph
Provenance _provenance
Class uk.ac.vamsas.objects.core.AnnotationElement extends Vobject implements Serializable |
Serialized Fields |
long _position
boolean _has_position
boolean _after
boolean _has_after
java.lang.String _id
java.lang.String _description
java.util.Vector _glyphList
java.util.Vector _valueList
Class uk.ac.vamsas.objects.core.AppData extends Vobject implements Serializable |
Serialized Fields |
java.lang.Object _choiceValue
byte[] _data
java.lang.String _dataReference
Class uk.ac.vamsas.objects.core.ApplicationData extends AppData implements Serializable |
Serialized Fields |
java.lang.String _version
java.lang.String _name
java.util.Vector _userList
Common _common
java.util.Vector _instanceList
Class uk.ac.vamsas.objects.core.Attachment extends AppData implements Serializable |
Serialized Fields |
boolean _compressed
boolean _has_compressed
java.lang.String _type
java.lang.Object _objectref
java.lang.String _id
Class uk.ac.vamsas.client.ClientHandle extends java.lang.Object implements Serializable |
serialVersionUID: 0l
Serialized Fields |
java.lang.String clientName
java.lang.String clientUrn
java.lang.String version
Class uk.ac.vamsas.objects.core.Common extends AppData implements Serializable |
Class uk.ac.vamsas.objects.core.DataSet extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _id
java.util.Vector _sequenceList
java.util.Vector _sequenceMappingList
java.util.Vector _dataSetAnnotationsList
java.util.Vector _alignmentList
java.util.Vector _treeList
Provenance _provenance
Class uk.ac.vamsas.objects.core.DataSetAnnotations extends RangeAnnotation implements Serializable |
Serialized Fields |
java.util.Vector _seqRef
Provenance _provenance
Class uk.ac.vamsas.objects.core.DbRef extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _source
java.lang.String _version
java.lang.String _accessionId
java.lang.String _id
java.util.Vector _mapList
java.util.Vector _linkList
java.util.Vector _propertyList
Class uk.ac.vamsas.objects.core.Entry extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _user
java.lang.String _app
java.lang.String _action
java.util.Date _date
java.util.Vector _propertyList
java.util.Vector _paramList
java.util.Vector _inputList
Class uk.ac.vamsas.objects.core.Glyph extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _dict
Class uk.ac.vamsas.objects.core.Input extends RangeType implements Serializable |
Serialized Fields |
java.lang.String _name
java.util.Vector _objRef
Class uk.ac.vamsas.objects.core.Instance extends AppData implements Serializable |
Serialized Fields |
java.lang.String _urn
Class uk.ac.vamsas.client.InvalidSessionDocumentException extends java.lang.Exception implements Serializable |
Class uk.ac.vamsas.client.InvalidSessionUrnException extends java.lang.Exception implements Serializable |
Class uk.ac.vamsas.objects.core.Link extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _href
Class uk.ac.vamsas.objects.core.Local extends MapRangeType implements Serializable |
Class uk.ac.vamsas.objects.core.LockFile extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
Class uk.ac.vamsas.client.simpleclient.LockTimeoutException extends java.lang.Exception implements Serializable |
serialVersionUID: 1l
Class uk.ac.vamsas.objects.core.Map extends MapType implements Serializable |
Serialized Fields |
java.lang.String _id
Class uk.ac.vamsas.objects.core.MapList extends Vobject implements Serializable |
Serialized Fields |
long _from
boolean _has_from
long _to
boolean _has_to
long _start
boolean _has_start
long _end
boolean _has_end
Class uk.ac.vamsas.objects.core.Mapped extends MapRangeType implements Serializable |
Class uk.ac.vamsas.objects.core.Mapping extends MapList implements Serializable |
Serialized Fields |
java.lang.Object _onto
Class uk.ac.vamsas.objects.core.MapRangeType extends RangeType implements Serializable |
Serialized Fields |
long _unit
boolean _has_unit
Class uk.ac.vamsas.objects.core.MapType extends Vobject implements Serializable |
Serialized Fields |
Local _local
Mapped _mapped
Class uk.ac.vamsas.objects.core.Newick extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _title
java.lang.String _id
java.lang.String _modifiable
Class uk.ac.vamsas.client.NoDefaultSessionException extends java.lang.Exception implements Serializable |
Class uk.ac.vamsas.objects.core.NodeType extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _modifiable
java.lang.String _name
java.lang.String _description
java.util.Vector _vrefList
java.util.Vector _propertyList
Class uk.ac.vamsas.objects.core.Param extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _name
java.lang.String _type
Class uk.ac.vamsas.objects.core.Pos extends Vobject implements Serializable |
Serialized Fields |
int _i
boolean _has_i
Class uk.ac.vamsas.objects.core.Property extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _name
java.lang.String _type
Class uk.ac.vamsas.objects.core.Provenance extends Vobject implements Serializable |
Serialized Fields |
java.util.Vector _entryList
Class uk.ac.vamsas.objects.core.Range extends Vobject implements Serializable |
Serialized Fields |
int _seqAStart
boolean _has_seqAStart
int _seqAEnd
boolean _has_seqAEnd
int _seqBStart
boolean _has_seqBStart
int _seqBEnd
boolean _has_seqBEnd
Class uk.ac.vamsas.objects.core.RangeAnnotation extends RangeType implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _modifiable
java.lang.String _group
java.lang.String _type
java.lang.String _label
java.lang.String _description
java.lang.String _status
java.util.Vector _annotationElementList
java.util.Vector _scoreList
java.util.Vector _linkList
java.util.Vector _propertyList
Class uk.ac.vamsas.objects.core.RangeType extends Vobject implements Serializable |
Serialized Fields |
java.lang.Object _choiceValue
java.util.Vector _posList
java.util.Vector _segList
Class uk.ac.vamsas.objects.core.ReferenceType extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _content
java.lang.String _id
java.util.Vector _refs
Class uk.ac.vamsas.objects.core.Score extends Vobject implements Serializable |
Serialized Fields |
float _content
boolean _has_content
java.lang.String _name
Class uk.ac.vamsas.objects.core.Seg extends Vobject implements Serializable |
Serialized Fields |
int _start
boolean _has_start
int _end
boolean _has_end
boolean _inclusive
boolean _has_inclusive
Class uk.ac.vamsas.objects.utils.SeqAln extends Alignment implements Serializable |
Class uk.ac.vamsas.objects.core.Sequence extends SequenceType implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _dictionary
java.util.Vector _dbRefList
java.util.Vector _vxrefList
Class uk.ac.vamsas.objects.core.SequenceMapping extends MapType implements Serializable |
Serialized Fields |
java.lang.Object _loc
java.lang.Object _map
java.lang.String _id
Provenance _provenance
Class uk.ac.vamsas.objects.core.SequenceType extends Vobject implements Serializable |
Serialized Fields |
long _start
boolean _has_start
long _end
boolean _has_end
java.lang.String _sequence
java.lang.String _name
java.lang.String _description
java.util.Vector _propertyList
Class uk.ac.vamsas.client.SessionHandle extends java.lang.Object implements Serializable |
Serialized Fields |
java.lang.String sessionUrn
Class uk.ac.vamsas.objects.core.Tree extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _modifiable
java.lang.String _title
java.util.Vector _newickList
java.util.Vector _treenodeList
java.util.Vector _propertyList
Provenance _provenance
Class uk.ac.vamsas.objects.core.Treenode extends NodeType implements Serializable |
Serialized Fields |
java.util.Vector _treeId
java.lang.String _nodespec
Class uk.ac.vamsas.objects.core.User extends AppData implements Serializable |
Serialized Fields |
java.lang.String _fullname
java.lang.String _organization
Class uk.ac.vamsas.objects.core.VAMSAS extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _id
java.lang.String _modifiable
java.util.Vector _treeList
java.util.Vector _dataSetList
Class uk.ac.vamsas.objects.core.VamsasDocument extends Vobject implements Serializable |
Serialized Fields |
java.lang.String _version
LockFile _lockFile
Provenance _provenance
java.util.Vector _VAMSASList
java.util.Vector _applicationDataList
java.util.Vector _attachmentList
Class uk.ac.vamsas.client.VorbaId extends java.lang.Object implements Serializable |
serialVersionUID: 1l
Serialized Fields |
java.lang.String id
Class uk.ac.vamsas.objects.core.Vref extends ReferenceType implements Serializable |
Class uk.ac.vamsas.objects.core.Vxref extends ReferenceType implements Serializable |
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