Uses of Class
uk.ac.vamsas.objects.core.Tree

Packages that use Tree
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.test.simpleclient   
 

Uses of Tree in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type Tree
 void EmptyDocumentUpdater.update(Tree vobj)
           
 void IDocumentUpdater.update(Tree vobj)
           
 

Uses of Tree in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return Tree
 Tree Alignment.getTree(int index)
          Method getTree.
 Tree[] Alignment.getTree()
          Method getTree.Returns the contents of the collection in an Array.
 Tree Alignment.removeTreeAt(int index)
          Method removeTreeAt.
 Tree DataSet.getTree(int index)
          Method getTree.
 Tree[] DataSet.getTree()
          Method getTree.Returns the contents of the collection in an Array.
 Tree DataSet.removeTreeAt(int index)
          Method removeTreeAt.
static Tree Tree.unmarshal(java.io.Reader reader)
          Method unmarshal.
 Tree VAMSAS.getTree(int index)
          Method getTree.
 Tree[] VAMSAS.getTree()
          Method getTree.Returns the contents of the collection in an Array.
 Tree VAMSAS.removeTreeAt(int index)
          Method removeTreeAt.
 

Methods in uk.ac.vamsas.objects.core with parameters of type Tree
 void Alignment.addTree(Tree vTree)
           
 void Alignment.addTree(int index, Tree vTree)
           
 boolean Alignment.removeTree(Tree vTree)
          Method removeTree.
 void Alignment.setTree(int index, Tree vTree)
           
 void Alignment.setTree(Tree[] vTreeArray)
           
 void DataSet.addTree(Tree vTree)
           
 void DataSet.addTree(int index, Tree vTree)
           
 boolean DataSet.removeTree(Tree vTree)
          Method removeTree.
 void DataSet.setTree(int index, Tree vTree)
           
 void DataSet.setTree(Tree[] vTreeArray)
           
 void VAMSAS.addTree(Tree vTree)
           
 void VAMSAS.addTree(int index, Tree vTree)
           
 boolean VAMSAS.removeTree(Tree vTree)
          Method removeTree.
 void VAMSAS.setTree(int index, Tree vTree)
           
 void VAMSAS.setTree(Tree[] vTreeArray)
           
 

Uses of Tree in uk.ac.vamsas.test.simpleclient
 

Methods in uk.ac.vamsas.test.simpleclient with parameters of type Tree
static boolean ArchiveReports.treeReport(Tree t, boolean cascade, java.io.PrintStream outstr)