Uses of Class
uk.ac.vamsas.objects.core.AlignmentSequence

Packages that use AlignmentSequence
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
 

Uses of AlignmentSequence in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type AlignmentSequence
 void EmptyDocumentUpdater.update(AlignmentSequence vobj)
           
 void IDocumentUpdater.update(AlignmentSequence vobj)
           
 

Uses of AlignmentSequence in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return AlignmentSequence
 AlignmentSequence Alignment.getAlignmentSequence(int index)
          Method getAlignmentSequence.
 AlignmentSequence[] Alignment.getAlignmentSequence()
          Method getAlignmentSequence.Returns the contents of the collection in an Array.
 AlignmentSequence Alignment.removeAlignmentSequenceAt(int index)
          Method removeAlignmentSequenceAt.
 

Methods in uk.ac.vamsas.objects.core with parameters of type AlignmentSequence
 void Alignment.addAlignmentSequence(AlignmentSequence vAlignmentSequence)
           
 void Alignment.addAlignmentSequence(int index, AlignmentSequence vAlignmentSequence)
           
 boolean Alignment.removeAlignmentSequence(AlignmentSequence vAlignmentSequence)
          Method removeAlignmentSequence.
 void Alignment.setAlignmentSequence(int index, AlignmentSequence vAlignmentSequence)
           
 void Alignment.setAlignmentSequence(AlignmentSequence[] vAlignmentSequenceArray)
           
 

Uses of AlignmentSequence in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils that return AlignmentSequence
static AlignmentSequence Seq.newAlignmentSequence(java.lang.String name, java.lang.String alSequence, Sequence refseq, long start, long end)