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java.lang.Objectuk.ac.vamsas.objects.utils.trees.BinaryNode
uk.ac.vamsas.objects.utils.trees.SequenceNode
Field Summary | |
float |
dist
DOCUMENT ME!! |
boolean |
dummy
DOCUMENT ME!! |
Fields inherited from class uk.ac.vamsas.objects.utils.trees.BinaryNode |
bootstrap |
Constructor Summary | |
SequenceNode()
Creates a new SequenceNode object. |
|
SequenceNode(Vobject val,
SequenceNode parent,
float dist,
java.lang.String name)
Creates a new SequenceNode object. |
|
SequenceNode(Vobject val,
SequenceNode parent,
java.lang.String name,
float dist,
int bootstrap,
boolean dummy)
Creates a new SequenceNode object. |
Method Summary | |
SequenceNode |
AscendTree()
ascends the tree but doesn't stop until a non-dummy node is discovered. |
boolean |
isDummy()
|
boolean |
isPlaceholder()
|
boolean |
setDummy(boolean newstate)
DOCUMENT ME! |
void |
setPlaceholder(boolean Placeholder)
DOCUMENT ME! |
Methods inherited from class uk.ac.vamsas.objects.utils.trees.BinaryNode |
ascendLeft, ascendRight, detach, element, getBootstrap, getName, isLeaf, left, parent, right, setBootstrap, SetChildren, setElement, setLeft, setName, setParent, setRight |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
public float dist
public boolean dummy
Constructor Detail |
public SequenceNode()
public SequenceNode(Vobject val, SequenceNode parent, float dist, java.lang.String name)
val
- DOCUMENT ME!parent
- DOCUMENT ME!dist
- DOCUMENT ME!name
- DOCUMENT ME!public SequenceNode(Vobject val, SequenceNode parent, java.lang.String name, float dist, int bootstrap, boolean dummy)
val
- DOCUMENT ME!parent
- DOCUMENT ME!name
- DOCUMENT ME!dist
- DOCUMENT ME!bootstrap
- DOCUMENT ME!dummy
- DOCUMENT ME!Method Detail |
public boolean isDummy()
public boolean isPlaceholder()
public boolean setDummy(boolean newstate)
newstate
- DOCUMENT ME!
public void setPlaceholder(boolean Placeholder)
Placeholder
- DOCUMENT ME!public SequenceNode AscendTree()
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