|
|||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use SequenceType | |
uk.ac.vamsas.objects | |
uk.ac.vamsas.objects.core | |
uk.ac.vamsas.objects.utils |
Uses of SequenceType in uk.ac.vamsas.objects |
Methods in uk.ac.vamsas.objects with parameters of type SequenceType | |
void |
EmptyDocumentUpdater.update(SequenceType vobj)
|
void |
IDocumentUpdater.update(SequenceType vobj)
|
Uses of SequenceType in uk.ac.vamsas.objects.core |
Subclasses of SequenceType in uk.ac.vamsas.objects.core | |
class |
AlignmentSequence
Class AlignmentSequence. |
class |
Sequence
Class Sequence. |
Methods in uk.ac.vamsas.objects.core that return SequenceType | |
static SequenceType |
AlignmentSequence.unmarshal(java.io.Reader reader)
Method unmarshal. |
static SequenceType |
Sequence.unmarshal(java.io.Reader reader)
Method unmarshal. |
static SequenceType |
SequenceType.unmarshal(java.io.Reader reader)
Method unmarshal. |
Uses of SequenceType in uk.ac.vamsas.objects.utils |
Methods in uk.ac.vamsas.objects.utils with parameters of type SequenceType | |
static void |
Seq.write_PirSeq(java.io.OutputStream os,
SequenceType seq,
int wid)
|
static void |
Seq.write_FastaSeq(java.io.OutputStream os,
SequenceType seq)
|
static void |
Seq.write_FastaSeq(java.io.OutputStream os,
SequenceType seq,
int wid)
|
static boolean |
Seq.is_valid_aa_seq(SequenceType s)
|
static void |
SeqSet.write_Fasta(java.io.OutputStream os,
SequenceType[] seqs)
|
static void |
SeqSet.write_Fasta(java.io.OutputStream os,
SequenceType[] seqs,
boolean width80)
|
static void |
SeqSet.write_Fasta(java.io.OutputStream os,
SequenceType[] seqs,
int width)
|
static java.util.Hashtable |
SeqSet.uniquify(SequenceType[] sequences)
|
static boolean |
SeqSet.deuniquify(java.util.Hashtable map,
SequenceType[] sequences)
|
|
|||||||||||
PREV NEXT | FRAMES NO FRAMES |