Uses of Class
uk.ac.vamsas.objects.core.Entry

Packages that use Entry
uk.ac.vamsas.client.simpleclient   
uk.ac.vamsas.objects   
uk.ac.vamsas.objects.core   
uk.ac.vamsas.objects.utils   
uk.ac.vamsas.test.simpleclient   
uk.ac.vamsas.test.simpleclient.simpleapp   
 

Uses of Entry in uk.ac.vamsas.client.simpleclient
 

Methods in uk.ac.vamsas.client.simpleclient that return Entry
protected  Entry SimpleClient.getProvenanceEntry(java.lang.String action)
          construct a provenance entry for this client with the specified action string.
 

Uses of Entry in uk.ac.vamsas.objects
 

Methods in uk.ac.vamsas.objects with parameters of type Entry
 void EmptyDocumentUpdater.update(Entry vobj)
           
 void IDocumentUpdater.update(Entry vobj)
           
 

Uses of Entry in uk.ac.vamsas.objects.core
 

Methods in uk.ac.vamsas.objects.core that return Entry
static Entry Entry.unmarshal(java.io.Reader reader)
          Method unmarshal.
 Entry Provenance.getEntry(int index)
          Method getEntry.
 Entry[] Provenance.getEntry()
          Method getEntry.Returns the contents of the collection in an Array.
 Entry Provenance.removeEntryAt(int index)
          Method removeEntryAt.
 

Methods in uk.ac.vamsas.objects.core with parameters of type Entry
 void Provenance.addEntry(Entry vEntry)
           
 void Provenance.addEntry(int index, Entry vEntry)
           
 boolean Provenance.removeEntry(Entry vEntry)
          Method removeEntry.
 void Provenance.setEntry(int index, Entry vEntry)
           
 void Provenance.setEntry(Entry[] vEntryArray)
           
 

Uses of Entry in uk.ac.vamsas.objects.utils
 

Methods in uk.ac.vamsas.objects.utils that return Entry
static Entry ProvenanceStuff.newProvenanceEntry(java.lang.String app, java.lang.String user, java.lang.String action)
           
 

Methods in uk.ac.vamsas.objects.utils with parameters of type Entry
static Provenance ProvenanceStuff.newProvenance(Entry entry)
           
static Alignment SeqAln.make_Alignment(Entry origin, Sequence[] seqs)
          manufacture an alignment/dataset from an array of sequences
static Alignment SeqAln.read_FastaAlignment(java.io.InputStream os, Entry entry)
           
static Alignment SeqAln.read_ClustalAlignment(java.io.InputStream os, Entry entry)
           
 

Uses of Entry in uk.ac.vamsas.test.simpleclient
 

Methods in uk.ac.vamsas.test.simpleclient that return Entry
protected  Entry ClientDoc.getProvenanceEntry(java.lang.String action)
           
 

Uses of Entry in uk.ac.vamsas.test.simpleclient.simpleapp
 

Constructors in uk.ac.vamsas.test.simpleclient.simpleapp with parameters of type Entry
VamsasDatastore(ClientDoc cdoc, java.util.Hashtable vobj2jv, java.util.IdentityHashMap jv2vobj, Entry provEntry)