@article(Boehr:2009:Nat-Chem-Biol:19841628, author = "D.D. Boehr and R. Nussinov and P.E. Wright", year = "2009", title = "The role of dynamic conformational ensembles in biomolecular recognition", journal = "Nat. Chem. Biol.", volume = "5", number = "11", pages = "789--796", doi = "10.1038/nchembio.232", ) @inproceedings(cangelosi2003artificial, author = "A. Cangelosi and Nolfi S. and Parisi D.", year = "2003", title = "Artificial Life Models of Neural Development", booktitle = "On Growth, form and Computers", publisher = "Elsevier Academic Press", pages = "339--52", doi = "10.1016/B978-012428765-5/50051-7", ) @article(journals/bmcbi/FraccalvieriPSB11, author = "D. Fraccalvieri and A. Pandini and F. Stella and L. Bonati", year = "2011", title = "Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps.", journal = "BMC Bioinformatics", volume = "12", pages = "158", doi = "10.1186/1471-2105-12-158", ) @article(C2MB25192B, author = "D. Fraccalvieri and M. Tiberti and A. Pandini and L. Bonati and E. Papaleo", year = "2012", title = "Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics", journal = "Mol. Biosyst.", volume = "8", pages = "2680--91", doi = "10.1039/C2MB25192B", ) @book(horvath2011weighted, author = "S. Horvath", year = "2011", title = "Weighted Network Analysis: Applications in Genomics and Systems Biology", publisher = "Springer", doi = "10.1007/978-1-4419-8819-5", ) @article(kohonen-2012, author = "T.K. Kohonen", year = "2013", title = "{Essentials of the Self-Organizing Map}", journal = "Neural Networks", volume = "37", pages = "52--65", doi = "10.1016/j.neunet.2012.09.018", ) @article(journals/cj/Mojena77, author = "R. Mojena", year = "1977", title = "Hierarchical Grouping Methods and Stopping Rules: An Evaluation.", journal = "Comput. J.", volume = "20", number = "4", pages = "359--63", doi = "10.1093/comjnl/20.4.359", ) @book(Newman2010, author = "M.E.J. Newman", year = "2010", title = "Networks: An Introduction", publisher = "Oxford University Press", address = "New York", ) @article(10281_43815, author = "A. Pandini and D. Fraccalvieri and L. Bonati", year = "2013", title = "Artificial Neural Networks for Efficient Clustering of Conformational Ensembles and their Potential for Medicinal Chemistry", journal = "Curr. Top. Med. Chem.", volume = "13", number = "5", pages = "642--51", doi = "10.2174/1568026611313050007", ) @article(ISI:000251024200037, author = "J. Shao and S.W. Tanner and N. Thompson and T.E. Cheatham", year = "{2007}", title = "{Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms}", journal = "{J. Chem. Theory Comput.}", volume = "{3}", number = "{6}", pages = "{2312--34}", doi = "{10.1021/ct700119m}", )