Oana Andrei (2008):
A Rewriting Calculus for Graphs: Applications to Biology and Autonomous Systems.
Institut National Polytechnique de Lorraine.
Available at http://tel.archives-ouvertes.fr/tel-00337558/fr/.
Oana Andrei & Muffy Calder (2010):
A Model and Analysis of the AKAP Scaffold.
In: Proc. of CS2Bio'10,
To appear in Electronic Notes in Theoretical Computer Science.
Oana Andrei, Liliana Ibanescu & Hélène Kirchner (2006):
Non-intrusive Formal Methods and Strategic Rewriting for a Chemical Application..
In: Kokichi Futatsugi, Jean-Pierre Jouannaud & José Meseguer: Algebra, Meaning, and Computation,
Lecture Notes in Computer Science 4060.
Springer,
pp. 194–215.
Oana Andrei & Hélène Kirchner (2009):
A Higher-Order Graph Calculus for Autonomic Computing.
In: M. Lipshteyn, V.E. Levit & R.M. McConnell: Graph Theory, Computational Intelligence and Thought,
Lecture Notes in Computer Science 5420.
Springer,
pp. 15–26.
Oana Andrei & Hélène Kirchner (2009):
A Port Graph Calculus for Autonomic Computing and Invariant Verification.
In: Proceedings of the Fifth International Workshop on Computing with Terms and Graphs (TERMGRAPH 2009),
Electronic Notes in Theoretical Computer Science 253,
pp. 17–38.
David Auber (2003):
Tulip – A huge graph visualization framework.
In: P. Mutzel & M. Jünger: Graph Drawing Software,
Mathematics and Visualization Series.
Springer Verlag,
pp. 105–126.
Daniel Balasubramanian, Anantha Narayanan, Christopher P. van Buskirk & Gabor Karsai (2006):
The Graph Rewriting and Transformation Language: GReAT.
ECEASST 1.
Olivier Bournez, Guy-Marie C^ome, Valérie Conraud, Hélène Kirchner & Liliana Ibanescu (2003):
A Rule-Based Approach for Automated Generation of Kinetic Chemical Mechanisms..
In: Robert Nieuwenhuis: RTA,
Lecture Notes in Computer Science 2706.
Springer,
pp. 30–45.
L. P. Cordella, P. Foggia, C. Sansone & M. Vento (2004):
A (Sub)Graph Isomorphism Algorithm for Matching Large Graphs.
IEEE Trans. on Pattern Analysis and Machine Intelligence 26(10),
pp. 1367–1372.
Bruno Courcelle (1990):
Graph Rewriting: An Algebraic and Logic Approach.
In: J. van Leeuwen: Handbook of Theoretical Computer Science, Volume B: Formal Models and Semantics.
Elsevier Science Publishers and MIT Press,
pp. 193–242.
Vincent Danos & Cosimo Laneve (2004):
Formal Molecular Biology..
Theoretical Computer Science 325(1),
pp. 69–110.
Hartmut Ehrig, Gregor Engels, Hans-Jörg Kreowski & Grzegorz Rozenberg (1997):
Handbook of Graph Grammars and Computing by Graph Transformations, Volume 2: Applications, Languages, and Tools.
World Scientific.
Hartmut Ehrig, Hans-Jörg Kreowski, Ugo Montanari & Grzegorz Rozenberg (1997):
Handbook of Graph Grammars and Computing by Graph Transformations, Volume 3: Concurrency, Parallelism, and Distribution.
World Scientific.
Claudia Ermel, Michael Rudolf & Gabriele Taentzer (1997):
The AGG Approach: Language and Environment.
In: 1997handbook2.
World Scientific,
pp. 551–603.
James R. Faeder, Michael L. Blinov & William S. Hlavacek (2009):
Rule-Based Modeling of Biochemical Systems with BioNetGen.
In: Ivan V. Maly: Systems Biology,
Methods in Molecular Biology.
Humana Press,
pp. 133–168.
Maribel Fernández, Hélène Kirchner & Olivier Namet (2010):
A strategy language for graph rewriting.
Submitted, see http://www.oliviernamet.co.uk/Publications.html.
Maribel Fernández & Olivier Namet (2010):
Strategic Programming on Graph Rewriting Systems.
In: Proc. of the 1st International Workshop on Strategies in Rewriting, Proving, and Programming.
Chris Fox, Maribel Fernández & Shalom Lappin (2008):
Lambda Calculus, Type Theory, and Natural Language II.
J. Log. Comput. 18(2),
pp. 203.
Rubino Geiß, Gernot Veit Batz, Daniel Grund, Sebastian Hack & Adam Szalkowski (2006):
GrGen: A Fast SPO-Based Graph Rewriting Tool.
In: Andrea Corradini, Hartmut Ehrig, Ugo Montanari, Leila Ribeiro & Grzegorz Rozenberg: ICGT,
Lecture Notes in Computer Science 4178.
Springer,
pp. 383–397.
Jean Krivine, Robin Milner & Angelo Troina (2008):
Stochastic Bigraphs.
Electr. Notes Theor. Comput. Sci. 218,
pp. 73–96.
Yves Lafont (1990):
Interaction Nets.
In: Proc. of the 17th ACM Symposium on Principles of Programming Languages (POPL'90).
ACM Press,
pp. 95–108.
Ulrich Nickel, Jörg Niere & Albert Zündorf (2000):
The FUJABA environment.
In: ICSE,
pp. 742–745.
Detlef Plump (2009):
The Graph Programming Language GP.
In: Symeon Bozapalidis & George Rahonis: CAI,
Lecture Notes in Computer Science 5725.
Springer,
pp. 99–122.
Arend Rensink (2003):
The GROOVE Simulator: A Tool for State Space Generation.
In: John L. Pfaltz, Manfred Nagl & Boris Böhlen: AGTIVE,
Lecture Notes in Computer Science 3062.
Springer,
pp. 479–485.
Grzegorz Rozenberg (1997):
Handbook of Graph Grammars and Computing by Graph Transformations, Volume 1: Foundations.
World Scientific.
Andy Schürr, Andreas J. Winter & Albert Zündorf (1997):
The PROGRES Approach: Language and Environment..
In: 1997handbook2.
World Scientific,
pp. 479–546.
J. R. Ullmann (1976):
An Algorithm for Subgraph Isomorphism.
JACM 23(1),
pp. 31–42.
Daqian Zhang & Kang Zhang (1997):
Reserved Graph Grammar: A Specification Tool for Diagrammatic VPLs.
In: Proc. of VL'97.
IEEE Computer Society,
pp. 284.