@article(Barabasi2011, author = {Albert-L\'{a}szl\'{o} Barab\'{a}si and Natali Gulbahce and Joseph Loscalzo}, year = {2011}, title = {{Network medicine: a network-based approach to human disease}}, journal = {Nature reviews. Genetics}, volume = {12}, pages = {56--68}, doi = {10.1038/nrg2918}, ) @article(BianeD19, author = {C{\'{e}}lia Biane and Franck Delaplace}, year = {2019}, title = {Causal Reasoning on {B}oolean Control Networks Based on Abduction: Theory and Application to Cancer Drug Discovery}, journal = {{IEEE} {ACM} Transactions on Computational Biology and Bioinformatics}, volume = {16}, number = {5}, pages = {1574--1585}, doi = {10.1109/TCBB.2018.2889102}, ) @article(CardonaCMPPHJPS2011, author = {M\'{o}nica Cardona and M. Angels Colomer and Antoni Margalida and Antoni Palau and P{\'e}rez-Hurtado, Ignacio and P{\'e}rez-Jim{\'e}nez, Mario J. and Delf\'{i} Sanuy}, year = {2011}, title = {A computational modeling for real ecosystems based on {P} systems}, journal = {Natural Computing}, volume = {10}, pages = {39--53}, doi = {10.1007/s11047-010-9191-3}, ) @article(CardonaCMPHJPS2010, author = {M{\'o}nica Cardona and M. Angels Colomer and Antoni Margalida and P{\'e}rez-Hurtado, Ignacio and P{\'e}rez-Jim{\'e}nez, Mario J. and Delf{\'\i} Sanuy}, year = {2010}, title = {A {P} system based model of an ecosystem of some scavenger birds}, journal = {Lecture Notes in Computer Science}, volume = {5957}, pages = {182--195}, doi = {10.1007/978-3-642-11467-0_14}, note = {Membrane Computing, 10th International Workshop, WMC 2009, Curtea de Arge\c{s}, Romania, August 24-27, 2009, Revised Selected and Invited Papers.}, ) @proceedings(CMSB2021, editor = {Eugenio Cinquemani and Lo{\"{\i}}c Paulev{\'{e}}}, year = {2021}, title = {Computational Methods in Systems Biology - 19th International Conference, {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12881}, publisher = {Springer}, doi = {10.1007/978-3-030-85633-5}, ) @article(ColomerLMMPHJPSSVC2011, author = {M. Angels Colomer and Lav{\'\i}n, Santiago and Ignasi Marco and Antoni Margalida and P{\'e}rez-Hurtado, Ignacio and P{\'e}rez-Jim{\'e}nez, Mario J. and Delf{\'\i} Sanuy and Eduardo Serrano and Valencia-Cabrera, Luis}, year = {2011}, title = {Modeling population growth of {P}yrenean {C}hamois ({R}upicapra p. pyrenaica) by using {P} systems}, journal = {Lecture Notes in Computer Science}, volume = {6501}, pages = {144--159}, doi = {10.1007/978-3-642-18123-8_13}, url = {http://springerlink.com/content/y87522j29m145434}, ) @article(ColomerMVP2014, author = {M. Angels Colomer and Antoni Margalida and Luís Valencia and Antoni Palau}, year = {2014}, title = {Application of a computational model for complex fluvial ecosystems: The population dynamics of zebra mussel {D}reissena polymorpha as a case study}, journal = {Ecological Complexity}, volume = {20}, pages = {116--126}, doi = {10.1016/j.ecocom.2014.09.006}, url = {http://www.sciencedirect.com/science/article/pii/S1476945X14000981}, ) @article(EhrenfeuchtR2007, author = {Andrzej Ehrenfeucht and Grzegorz Rozenberg}, year = {2007}, title = {Reaction Systems}, journal = {Fundamenta Informaticae}, volume = {75}, number = {1-4}, pages = {263--280}, url = {http://content.iospress.com/articles/fundamenta-informaticae/fi75-1-4-15}, ) @article(Fearon1990, author = {Eric R. Fearon and Bert Vogelstein}, year = {1990}, title = {A genetic model for colorectal tumorigenesis}, journal = {Cell}, volume = {61}, number = {5}, pages = {759--767}, doi = {10.1016/0092-8674(90)90186-i}, ) @book(CMC2020, editor = {Rudolf Freund and Tseren-Onolt Ishdorj and Grzegorz Rozenberg and Arto Salomaa and Claudio Zandron}, year = {2020}, title = {21st International Conference, CMC 2020, Virtual Event, September 14--18, 2020, Revised Selected Papers}, publisher = {Springer}, doi = {10.1007/978-3-030-77102-7}, ) @incollection(FreundV2007, author = {Rudolf Freund and Sergey Verlan}, year = {2007}, title = {A Formal Framework for Static (Tissue) {P} Systems}, editor = {George Eleftherakis and Petros Kefalas and P\u{a}un, {\relax Gh}eorghe and Grzegorz Rozenberg and Arto Salomaa}, booktitle = {Membrane Computing}, series = {Lecture Notes in Computer Science}, volume = {4860}, publisher = {Springer}, pages = {271--284}, doi = {10.1007/978-3-540-77312-2\_17}, ) @article(GarciaQuismondoGRN2018, author = {Garc{\'\i}a-Quismondo, Manuel and Carmen Graciani and Riscos-N{\'u}{\~n}ez, Agust{\'\i}n}, year = {2018}, title = {Membrane Computing as a Modelling Tool: Looking Back and Forward from {S}evilla}, journal = {Enjoying Natural Computing: Essays Dedicated to Mario de Jes{\'u}s P{\'e}rez-Jim{\'e}nez on the Occasion of His 70th Birthday}, pages = {114--129}, doi = {10.1007/978-3-030-00265-7_10}, ) @misc(imcs, title = {{Bulletin of the {I}nternational {M}embrane {C}omputing {S}ociety ({IMCS})}}, howpublished = {\url{http://membranecomputing.net/IMCSBulletin/index.php}}, ) @article(IvanovP20, author = {Sergiu Ivanov and Ion Petre}, year = {2020}, title = {Controllability of reaction systems}, journal = {Journal of Membrane Computing}, volume = {2}, number = {4}, pages = {290--302}, doi = {10.1007/s41965-020-00055-x}, ) @article(Lee2012, author = {Michael Lee and Albert S. Ye and Alexandra K. Gardino and Anne Heijink and Peter Sorger and Gavin Macbeath and Michael Yaffe}, year = {2012}, title = {Sequential Application of Anti-Cancer Drugs Enhances Cell Death by Re-wiring Apoptotic Signaling Networks}, journal = {Cell}, volume = {149}, pages = {780--794}, doi = {10.1016/j.cell.2012.03.031}, ) @book(BWMC2020, editor = {Orellana-Mart\'{i}n, David and P\u{a}un, {\relax{Gh}}eorghe and Riscos-N\'{u}{\~n}ez, Agust\'{i}n and P\'{e}rez-Hurtado, Ignacio}, year = {2020}, title = {Proceedings of the 18th Brainstorming Week on Membrane Computing, BWMC 2020}, publisher = {F{\'e}nix Editora}, address = {Sevilla, Spain}, ) @book(JMC2022, editor = {Linqiang Pan and P\u{a}un, Gheorghe}, year = {March 2022}, title = {Journal of Membrane Computing}, volume = {4 issue 1}, publisher = {Springer}, ) @article(PardoID21, author = {J{\'{e}}r{\'{e}}mie Pardo and Sergiu Ivanov and Franck Delaplace}, year = {2021}, title = {Sequential reprogramming of biological network fate}, journal = {Theoretical Computer Science}, volume = {872}, pages = {97--116}, doi = {10.1016/j.tcs.2021.03.013}, ) @article(Paun2000, author = {P\u{a}un, {\relax Gh}eorghe}, year = {2000}, title = {Computing With Membranes}, journal = {Journal of Computer and System Sciences}, volume = {61}, number = {1}, pages = {108--143}, doi = {10.1006/jcss.1999.1693}, ) @book(handMC, editor = {P\u{a}un, {\relax Gh}eorghe and Grzegorz Rozenberg and Arto Salomaa}, year = {2010}, title = {The Oxford Handbook of Membrane Computing}, publisher = {Oxford University Press}, ) @misc(RGNC, title = {Bibliography of the Research Group on Natural Computing, {U}niversity of {S}eville, {S}pain}, howpublished = {\url{http://www.gcn.us.es/?q=biblio}}, ) @article(Thomas1973, author = {Ren\'{e} Thomas}, year = {1973}, title = {Boolean formalization of genetic control circuits}, journal = {Journal of Theoretical Biology}, volume = {42}, number = {3}, pages = {563--585}, doi = {10.1016/0022-5193(73)90247-6}, ) @article(ValenciaCabreraGQJPSYP2013, author = {Valencia-Cabrera, Luis and Garc{\'\i}a-Quismondo, Manuel and P{\'e}rez-Jim{\'e}nez, Mario J. and Yansen Su and Hui Yu and Linqiang Pan}, year = {2013}, title = {Analysing Gene Networks with {PDP} Systems. {A}rabidopsis thaliana, a Case Study}, journal = {Eleventh Brainstorming Week on Membrane Computing (11BWMC)}, pages = {257--272}, url = {http://www.gcn.us.es/files/11bwmc/257_valencia_cabrera.pdf}, ) @article(ValenciaCabreraGPHJPRN2018, author = {Valencia-Cabrera, Luis and Carmen Graciani and P{\'e}rez-Hurtado, Ignacio and P{\'e}rez-Jim{\'e}nez, Mario J. and Riscos-N{\'u}{\~n}ez, Agust{\'\i}n}, year = {2018}, title = {A Decade of Ecological Membrane Computing Applications}, journal = {Bulletin of the International Membrane Computing Society}, volume = {6}, pages = {39--50}, url = {http://membranecomputing.net/IMCSBulletin/pdf/BulletinDec2018.pdf}, ) @article(Zanudo2018, author = {Za\~{n}udo, Jorge G. T. and Steven N. Steinway and R\'{e}ka Albert}, year = {2018}, title = {Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer}, journal = {Current Opinion in Systems Biology}, volume = {9}, pages = {1--10}, doi = {10.1016/j.coisb.2018.02.002}, ) @misc(ACMC2022, title = {{11th Asian Conference on Membrane Computing, ACMC 2022}}, howpublished = {\url{https://aclab.dcs.upd.edu.ph/acmc}}, )