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 author       = "Leonard Adleman and Qi~Cheng and Ashish Goel and Ming-Deh Huang",
 year         = "2001",
 title        = "Running time and program size for self-assembled squares",
 booktitle    = "Proceedings of the 33rd Annual ACM Symposium on Theory of Computing",
 address      = "Hersonissos, Greece",
 pages        = "740--748",
 doi          = "10.1145/380752.380881",
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@inproceedings(arrighi2012intrinsic,
 author       = "Pablo Arrighi and Nicolas Schabanel and Guillaume Theyssier",
 year         = "2012",
 title        = "Intrinsic Simulations between Stochastic Cellular Automata",
 booktitle    = "JAC 2012: 3rd international symposium Journ\'{e}es Automates Cellulaires",
 series       = "Electronic Proceedings in Theoretical Computer Science",
 volume       = "90",
 publisher    = "Open Publishing Association",
 pages        = "208--224",
 doi          = "10.4204/EPTCS.90.17",
)
@inproceedings(Versus,
 author       = "Sarah Cannon and Erik~D. Demaine and Martin~L. Demaine and Sarah Eisenstat and Matthew~J. Patitz and Robert Schweller and Scott~M. Summers and Andrew Winslow",
 year         = "2013",
 title        = "Two Hands Are Better Than One (up to constant factors): Self-Assembly In The {2HAM} vs.\ {aTAM}",
 booktitle    = "STACS: Proceedings of the Thirtieth International Symposium on Theoretical Aspects of Computer Science",
 series       = "LIPIcs",
 volume       = "20",
 pages        = "172--184",
 doi          = "10.4230/LIPIcs.STACS.2013.172",
)
@article(goles-communicationcomplexity,
 author       = "Eric~Goles Ch. and Pierre-Etienne Meunier and Ivan Rapaport and Guillaume Theyssier",
 year         = "2011",
 title        = "Communication complexity and intrinsic universality in cellular automata",
 journal      = "Theoretical Computer Science",
 volume       = "412",
 number       = "1-2",
 pages        = "2--21",
 doi          = "10.1016/j.tcs.2010.10.005",
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@inproceedings(Cook-2011,
 author       = "Matthew Cook and Yunhui Fu and Robert~T. Schweller",
 year         = "2011",
 title        = "Temperature~1 self-assembly: deterministic assembly in~{3D} and probabilistic assembly in~{2D}",
 booktitle    = "Proceedings of the 22nd Annual ACM-SIAM Symposium on Discrete Algorithms",
 pages        = "570--589",
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@article(bulkingI,
 author       = "Marianne Delorme and Jacques Mazoyer and Nicolas Ollinger and Guillaume Theyssier",
 year         = "2011",
 title        = "Bulking {I}: an abstract theory of bulking",
 journal      = "Theoretical Computer Science",
 volume       = "412",
 number       = "30",
 pages        = "3866--3880",
 doi          = "10.1016/j.tcs.2011.02.023",
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@article(bulkingII,
 author       = "Marianne Delorme and Jacques Mazoyer and Nicolas Ollinger and Guillaume Theyssier",
 year         = "2011",
 title        = "{B}ulking {II}: {C}lassifications of cellular automata",
 journal      = "Theoretical Computer Science",
 volume       = "412",
 number       = "30",
 pages        = "3881--3905",
 doi          = "10.1016/j.tcs.2011.02.024",
)
@techreport(one,
 author       = "Erik~D. Demaine and Martin~L. Demaine and S\'andor~P. Fekete and Matthew~J. Patitz and Robert~T. Schweller and Andrew Winslow and Damien Woods",
 year         = "2012",
 title        = "One tile to rule them all: simulating any {T}uring machine, tile assembly system, or tiling system with a single puzzle piece",
 type         = "Technical Report",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1212.4756}{\texttt {arXiv:1212.4756}} [cs.DS]",
)
@inproceedings(2HAMIU,
 author       = "Erik~D. Demaine and Matthew~J. Patitz and Trent~A. Rogers and Robert~T. Schweller and Scott~M. Summers and Damien Woods",
 year         = "2013",
 title        = "The two-handed tile assembly model is not intrinsically universal",
 booktitle    = "ICALP: 40th International Colloquium on Automata, Languages and Programming. Proceedings, part 1",
 series       = "LNCS",
 volume       = "7965",
 address      = "Riga, Latvia",
 pages        = "400--412",
 doi          = "10.1007/978-3-642-39206-1\_34",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1306.6710}{\texttt {arXiv:1306.6710}} [cs.CG]",
)
@article(dotysurvey,
 author       = "David Doty",
 year         = "2012",
 title        = "Theory of Algorithmic Self-Assembly",
 journal      = "Communications of the ACM",
 volume       = "55(12)",
 pages        = "78--88",
 doi          = "10.1145/2380656.2380675",
)
@inproceedings(IUSA,
 author       = "David Doty and Jack~H. Lutz and Matthew~J. Patitz and Robert~T. Schweller and Scott~M. Summers and Damien Woods",
 year         = "2012",
 title        = "The tile assembly model is intrinsically universal",
 booktitle    = "FOCS: Proceedings of the 53rd Annual IEEE Symposium on Foundations of Computer Science",
 pages        = "439--446",
 doi          = "10.1109/FOCS.2012.76",
)
@inproceedings(USA,
 author       = "David Doty and Jack~H. Lutz and Matthew~J. Patitz and Scott~M. Summers and Damien Woods",
 year         = "2009",
 title        = "Intrinsic Universality in Self-Assembly",
 booktitle    = "STACS: Proceedings of the 27th International Symposium on Theoretical Aspects of Computer Science",
 pages        = "275--286",
 doi          = "10.4230/LIPIcs.STACS.2010.2461",
)
@techreport(hendricks2013signal,
 author       = "Jacob Hendricks and Jennifer~E Padilla and Matthew~J Patitz and Trent~A Rogers",
 year         = "2013",
 title        = "Signal Transmission Across Tile Assemblies: {3D} Static Tiles Simulate Active Self-Assembly by {2D} Signal-Passing Tiles",
 type         = "Technical Report",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1306.5005}{\texttt {arXiv:1306.5005}} [cs.ET]",
)
@inproceedings(HendricksPatitzTAMCA,
 author       = "Jacob Hendricks and Matthew~J. Patitz",
 title        = "On the Equivalence of Cellular Automata and the Tile Assembly Model",
 booktitle    = "Proceedings of Machines, Computations and Universality (MCU 2013)",
 address      = "University of Z\"{u}rich, Switzerland. September 9-12, 2013",
 note         = "To appear",
)
@techreport(jonoska2012active,
 author       = "Natasha Jonoska and Daria Karpenko",
 year         = "2012",
 title        = "Active tile self-assembly, self-similar structures and recursion",
 type         = "Technical Report",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1211.3085}{\texttt {arXiv:1211.3085}} [cs.ET]",
)
@incollection(kari2012triangular,
 author       = "Lila Kari and Shinnosuke Seki and Zhi Xu",
 year         = "2012",
 title        = "Triangular and hexagonal tile self-assembly systems",
 booktitle    = "Computation, Physics and Beyond",
 publisher    = "Springer",
 pages        = "357--375",
 doi          = "10.1007/978-3-642-27654-5\_28",
)
@inproceedings(LafitteW07,
 author       = "Gr{\'e}gory Lafitte and Michael Weiss",
 year         = "2007",
 title        = "Universal Tilings",
 booktitle    = "{STACS} 2007, 24th Annual Symposium on Theoretical Aspects of Computer Science, Aachen, Germany, February 22-24, 2007, Proceedings",
 series       = "LNCS",
 volume       = "4393",
 publisher    = "Springer",
 pages        = "367--380",
 doi          = "10.1007/978-3-540-70918-3\_32",
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@inproceedings(LafitteW09,
 author       = "Gr{\'e}gory Lafitte and Michael Weiss",
 year         = "2009",
 title        = "An Almost Totally Universal Tile Set",
 booktitle    = "TAMC: Theory and Applications of Models of Computation, 6th Annual Conference, Changsha, China, May 18-22, 2009. Proceedings",
 series       = "LNCS",
 volume       = "5532",
 publisher    = "Springer",
 pages        = "271--280",
 doi          = "10.1007/978-3-642-02017-9\_30",
)
@techreport(temp1notIU,
 author       = "Pierre-\'{E}tienne Meunier and Matthew~J. Patitz and Scott~M. Summers and Guillaume Theyssier and Andrew Winslow and Damien Woods",
 year         = "2013",
 title        = "Intrinsic universality in tile self-assembly requires cooperation",
 type         = "Technical Report",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1304.1679}{\texttt {arXiv:1304.1679}} [cs.CC]",
)
@inproceedings(Ollinger08,
 author       = "Nicolas Ollinger",
 title        = "Universalities in cellular automata a (short) survey",
 booktitle    = "JAC: Symposium on Cellular Automata Journ\'ees Automates Cellulaires, 2008",
 pages        = "102--118",
 note         = "\href {http://hal.archives-ouvertes.fr/hal-00271840}{\texttt {hal-00271840}}",
)
@article(ollinger-fourstates,
 author       = "Nicolas Ollinger and Ga\IeC {\'e}tan Richard",
 year         = "2011",
 title        = "Four states are enough!",
 journal      = "Theoretical Computer Science",
 volume       = "412",
 number       = "1-2",
 pages        = "22--32",
 doi          = "10.1016/j.tcs.2010.08.018",
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@article(patitz2013introduction,
 author       = "Matthew~J Patitz",
 year         = "2013",
 title        = "An introduction to tile-based self-assembly and a survey of recent results",
 journal      = "Natural Computing",
 pages        = "1--30",
 doi          = "10.1007/s11047-013-9379-4",
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 author       = "Paul W.~K. Rothemund and Erik Winfree",
 year         = "2000",
 title        = "The Program-size Complexity of Self-Assembled Squares (extended abstract)",
 booktitle    = "STOC '00: Proceedings of the thirty-second annual ACM Symposium on Theory of Computing",
 publisher    = "ACM",
 address      = "Portland, Oregon, United States",
 pages        = "459--468",
 doi          = "10.1145/335305.335358",
)
@article(SolWin07,
 author       = "David Soloveichik and Erik Winfree",
 year         = "2007",
 title        = "Complexity of Self-Assembled Shapes",
 journal      = "SIAM Journal on Computing",
 volume       = "36",
 number       = "6",
 pages        = "1544--1569",
 doi          = "10.1137/S0097539704446712",
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 author       = "Hao Wang",
 year         = "1961",
 title        = "Proving Theorems by Pattern Recognition -- {II}",
 journal      = "The Bell System Technical Journal",
 volume       = "XL",
 number       = "1",
 pages        = "1--41",
 doi          = "10.1002/j.1538-7305.1961.tb03975.x",
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 author       = "Erik Winfree",
 year         = "1998",
 title        = "Algorithmic Self-Assembly of {D}{N}{A}",
 school       = "California Institute of Technology",
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@inproceedings(nubots,
 author       = "Damien Woods and Ho-Lin Chen and Scott Goodfriend and Nadine Dabby and Erik Winfree and Peng Yin",
 year         = "2013",
 title        = "Active self-assembly of algorithmic shapes and patterns in polylogarithmic time",
 booktitle    = "ITCS: Proceedings of the 4th conference on Innovations in Theoretical Computer Science",
 organization = "ACM",
 pages        = "353--354",
 doi          = "10.1145/2422436.2422476",
 note         = "Arxiv preprint \href {http://arxiv.org/abs/1301.2626}{\texttt {arXiv:1301.2626}} [cs.DS]",
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