@article(bagnoli2007risk, author = "F. Bagnoli and P. Li\`o and L. Sguanci", year = "2007", title = "Risk perception in epidemic modeling", journal = "Physical Review E", volume = "76", number = "6", pages = "061904", doi = "10.1103/PhysRevE.76.061904", ) @article(bartocci2012tcsb, author = "E. Bartocci and P. Li\`o and M. Merelli and N. Paoletti", year = "2012", title = "Multiple Verification in Complex Biological Systems: the Bone Remodelling Case Study", journal = "Transactions on Computational Systems Biology. To appear", ) @article(batt2005qualitative, author = "G. Batt and D. Ropers and H. De Jong and J. Geiselmann and M. Page and D. Schneider", year = "2005", title = "Qualitative analysis and verification of hybrid models of genetic regulatory networks: Nutritional stress response in Escherichia coli", journal = "Hybrid Systems: Computation and Control", pages = "134--150", doi = "10.1007/978-3-540-31954-2\_9", ) @article(bemporad1999control, author = "A. Bemporad and M. Morari", year = "1999", title = "Control of systems integrating logic, dynamics, and constraints", journal = "Automatica", volume = "35", pages = "407--428", doi = "10.1016/S0005-1098(98)00178-2", ) @inproceedings(bortolussi2010hybrid, author = "L. Bortolussi and V. Galpin and J. Hillston and M. Tribastone", year = "2010", title = "Hybrid semantics for PEPA", booktitle = "Quantitative Evaluation of Systems (QEST), 2010 Seventh International Conference on the", organization = "IEEE", pages = "181--190", doi = "10.1109/QEST.2010.31", ) @article(bortolussi2009hybrid, author = "L. Bortolussi and A. Policriti", year = "2009", title = "Hybrid Dynamics of Stochastic $\pi $-calculus", journal = "Mathematics in Computer Science", volume = "2", number = "3", pages = "465--491", doi = "10.1007/s11786-008-0065-3", ) @inproceedings(cardelli2008processes, author = "L. Cardelli", year = "2008", title = "From processes to odes by chemistry", booktitle = "Fifth Ifip International Conference On Theoretical Computer Science--Tcs 2008", organization = "Springer", pages = "261--281", doi = "10.1007/978-0-387-09680-3\_18", ) @article(cardelli2008computational, author = "L. Cardelli and G. Zavattaro", year = "2008", title = "On the computational power of biochemistry", journal = "Algebraic Biology", pages = "65--80", doi = "10.1007/978-3-540-85101-1\_6", ) @article(galpin2009hype, author = "V. Galpin and L. Bortolussi and J. Hillston", year = "2009", title = "HYPE: a process algebra for compositional flows and emergent behaviour", journal = "CONCUR 2009-Concurrency Theory", pages = "305--320", doi = "10.1007/978-3-642-04081-8\_21", ) @inproceedings(grosu2011cardiac, author = "R. Grosu and G. Batt and F. Fenton and J. Glimm and C. Le Guernic and S. Smolka and E. Bartocci", year = "2011", title = "From cardiac cells to genetic regulatory networks", booktitle = "Computer Aided Verification", organization = "Springer", pages = "396--411", doi = "10.1007/978-3-642-22110-1\_31", ) @inproceedings(henzinger1996theory, author = "T.A. Henzinger", year = "1996", title = "The theory of hybrid automata", booktitle = "Logic in Computer Science, 1996. LICS'96. Proceedings., Eleventh Annual IEEE Symposium on", organization = "IEEE", pages = "278--292", doi = "10.1109/LICS.1996.561342", ) @article(kermack1932contributions, author = "W.O. Kermack and A.G. McKendrick", year = "1932", title = "Contributions to the mathematical theory of epidemics. II. The problem of endemicity", journal = "Proceedings of the Royal society of London. Series A", volume = "138", number = "834", pages = "55--83", doi = "10.1098/rspa.1932.0171", ) @misc(mpt, author = "M. Kvasnica and P. Grieder and M. Baoti\'{c}", year = "2004", title = "{Multi-Parametric Toolbox (MPT)}", url = "http://control.ee.ethz.ch/~mpt/", ) @inproceedings(lapin2011shave, author = "M. Lapin and L. Mikeev and V. Wolf", year = "2011", title = "SHAVE: stochastic hybrid analysis of markov population models", booktitle = "Proceedings of the 14th international conference on Hybrid systems: computation and control", organization = "ACM", pages = "311--312", doi = "10.1145/1967701.1967746", ) @article(lio2012osteomyelitis, author = "P. Li\`o and N. Paoletti and M.A. Moni and K. Atwell and M. Merelli and Viceconti M.", year = "2012", title = "{Modelling osteomyelitis}", journal = "BMC Bioinformatics, supplement on NETTAB 2011 workshop. To appear", ) @book(lunze2009handbook, author = "J. Lunze and F. Lamnabhi-Lagarrigue", year = "2009", title = "Handbook of hybrid systems control: theory, tools, applications", publisher = "Cambridge University Press", ) @article(norman2003developing, author = "R. Norman and C. Shankland", year = "2003", title = "Developing the use of process algebra in the derivation and analysis of mathematical models of infectious disease", journal = "Computer Aided Systems Theory-EUROCAST 2003", pages = "404--414", doi = "10.1007/978-3-540-45210-2\_37", ) @inproceedings(paoletti2011, author = "N. Paoletti and P. Li\`{o} and E. Merelli and M. Viceconti", year = "2011", title = "Osteoporosis: a multiscale modeling viewpoint", booktitle = "Proceedings of the 9th International Conference on Computational Methods in Systems Biology (CMSB '11)", pages = "183--193", doi = "10.1145/2037509.2037536", ) @article(paoletti2011spec, author = "N. Paoletti and P. Li\`{o} and E. Merelli and M. Viceconti", year = "2012", title = "Multi-level Computational Modeling and Quantitative Analysis of Bone Remodeling", journal = "IEEE/ACM Transactions on Computational Biology and Bioinformatics", volume = "99", number = "PrePrints", doi = "10.1109/TCBB.2012.51", ) @article(stone2000theoretical, author = "L. Stone and B. Shulgin and Z. Agur", year = "2000", title = "Theoretical examination of the pulse vaccination policy in the SIR epidemic model", journal = "Mathematical and Computer Modelling", volume = "31", number = "4", pages = "207--215", doi = "10.1016/S0895-7177(00)00040-6", ) @article(suzuki2010piecewise, author = "T. Suzuki and N. Bruchovsky and K. Aihara", year = "2010", title = "Piecewise affine systems modelling for optimizing hormone therapy of prostate cancer", journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences", volume = "368", number = "1930", pages = "5045--5059", doi = "10.1098/rsta.2010.0220", ) @book(viceconti2011multiscale, author = "M. Viceconti", year = "2011", title = "Multiscale Modeling of the Skeletal System", publisher = "Cambridge University Press", doi = "10.1017/CBO9781139049627", )