@misc(SB:SBMLwebsite, title = "SBML website", note = "\url {http://www.sbml.org}", ) @article(BIO:CANCER:Abrahamsson:2010:IASprostateCancerReview, author = "P.A. Abrahamsson", year = "2010", title = "Potential benefits of intermittent androgen suppression therapy in the treatment of prostate cancer: a systematic review of literature.", journal = "Eur Urol", volume = "57", pages = "49--59", doi = "10.1016/j.eururo.2009.07.049", ) @article(PA:Bernardo:1998:EMPAtcs, author = "M. Bernardo and R. Gorrieri", year = "1998", title = "A tutorial on EMPA: a theory of concurrent processes with nondeterminism, priorities, probabilities and time", journal = "Theoret. Comput. Sci.", volume = "202", pages = "1–--54", doi = "10.1016/S0304-3975(97)00127-8", ) @misc(My2011COMPMODsupp, title = "Supplementary Material", note = "\url {http://www.dmi.units.it/\~bortolu/files/COMPMOD2011supp.pdf}", ) @article(SB:Bortolussi:2008:BiomodelingSCCP:Journal, author = "L. Bortolussi and A. Policriti", year = "2008", title = "Modeling Biological Systems in Concurrent Constraint Programming", journal = "Constraints", volume = "13", number = "1", doi = "10.1007/s10601-007-9034-8", ) @article(PA:Bortolussi:2009:SCCPandODEjournal, author = "L. Bortolussi and A. Policriti", year = "2009", title = "Dynamical systems and stochastic programming --- from Ordinary Differential Equations and back", journal = "T. Comp. Sys. Bio.", volume = "XI", pages = "216-267", doi = "10.1007/978-3-642-04186-0\_11", ) @inproceedings(SB:Bortolussi:2009:CompMod, author = "L. Bortolussi and A. Policriti", year = "2009", title = "Hybrid Semantics of Stochastic Programs with Dynamic Reconfiguration", booktitle = "Proc. of CompMod", doi = "10.4204/EPTCS.6.5", ) @inproceedings(SB:Bortolussi:2009:BioLogic, author = "L. Bortolussi and A. Policriti", year = "2009", title = "Tales of Spatiality in stochastic Concurrent Constraint Programming", booktitle = "Proc. of Bio-Logic", ) @article(PA:Bortolussi:2010:HybridDynamicsStochProg:TCS, author = "L. Bortolussi and A. Policriti", year = "2010", title = "Hybrid Dynamics of Stochastic Programs", journal = "Theor. Comp. Sc.", volume = "411", number = "20", pages = "2052-2077", doi = "10.1016/j.tcs.2010.02.008", ) @article(BIO:CANCER:Brawer:2006:HormonalTherapyProstate, author = "M. K. Brawer", year = "2006", title = "Hormonal Therapy for Prostate Cancer", journal = "Rev Urol", volume = "8", pages = "S35--S47", ) @article(SB:Ciocchetta:2009:BioPEPAevents, author = "F. Ciocchetta", year = "2009", title = "{Bio-PEPA} with Events", journal = "T. Comp. Sys. Bio.", volume = "11", pages = "45--68", doi = "10.1007/978-3-642-04186-0\_3", ) @inbook(SB:HillstonCiocchetta:2008:ProcessAlgebraSysBio, author = "F. Ciocchetta and J. Hillston", year = "2008", title = "Formal methods for computational systems biology", chapter = "Process algebras in systems biology", pages = "265--312", publisher = "Springer-Verlag", doi = "10.1007/978-3-540-68894-5\_8", ) @article(SB:HillstonCiocchetta:2009:bioPEPA, author = "F. Ciocchetta and J. Hillston", year = "2009", title = "Bio-PEPA: A framework for the modelling and analysis of biological systems", journal = "Theor. Comp. Sc.", volume = "410", number = "33-34", pages = "3065 -- 3084", doi = "10.1016/j.tcs.2009.02.037", ) @book(STOC:Davis:1993:PDMP, author = "M.H.A. Davis", year = "1993", title = "Markov Models and Optimization", publisher = "Chapman \& Hall", ) @book(PA:Balbo:1995:ModelingGSPN, author = "M. Ajmone Marsan and G. Balbo and G. Conte and S. Donatelli and G. Franceschinis", year = "1995", title = "Modelling with Generalized Stochastic Petri Nets", publisher = "Wiley", ) @article(SB:Gillespie:2000:ChemicalLangevinEquation, author = "D. Gillespie", year = "2000", title = "The chemical Langevin equation", journal = "Journal of Chemical Physics", volume = "113", number = "1", pages = "297--306", doi = "10.1063/1.481811", ) @article(SB:Gillespie:1977:gillespieAlgorithm, author = "D.T. Gillespie", year = "1977", title = "Exact Stochastic Simulation of Coupled Chemical Reactions", journal = "J. of Phys. Chem.", volume = "81", number = "25", doi = "10.1021/j100540a008", ) @article(PA:Hermanns:2000:PAforPerformanceEvaluation, author = "H. Hermanns and U. Herzog and J.P. Katoen", year = "2002", title = "Process algebra for performance evaluation", journal = "Theor. Comp. Sci.", volume = "274", number = "1-2", pages = "43--87", doi = "10.1016/S0304-3975(00)00305-4", ) @article(SB:Aihara:2008:prostateIAS, author = "A.M. Ideta and G. Tanaka and T. Takeuchi and K. Aihara", year = "2008", title = "A mathematical model of intermittent androgen suppression for prostate cancer", journal = "Nonlinear Science", volume = "18", pages = "593--614", doi = "10.1007/s00332-008-9031-0", ) @article(SB:Jackson:2004:prostateModelCAS, author = "T. L. Jackson", year = "2004", title = "A mathematical model of prostate tumor growth and androgen-independent relapse", journal = "Disc Cont Dyn Sys B", volume = "4", pages = "187--201", doi = "10.3934/dcdsb.2004.4.187", ) @inproceedings(SbZuliani2009BayesianStatisticalMC, author = "S.K. Jha and E.M. Clarke and C.J. Langmead and A. Legay and A. Platzer and P. Zuliani", year = "2009", title = "A Bayesian Approach to Model Checking Biological Systems", booktitle = "Proc. of the CMSB", pages = "218--234", doi = "10.1007/978-3-642-03845-7\_15", ) @inproceedings(SB:Lecca:2011:TumorShrinkage, author = "P. Lecca and O. Kahramanogullari and D. Morpurgo and C. Priami and R. Soo", year = "2011", title = "Modelling the tumor shrinkage pharmacodynamics with BlenX", booktitle = "Proc. of ICCABS", doi = "10.1109/UKSIM.2011.24", ) @article(SB:Mazza:2009:TumorGrowthP, author = "T. Mazza and M. Cavaliere", year = "2009", title = "Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins", journal = "Electron. Notes Theor. Comput. Sci.", volume = "227", pages = "127--141", doi = "10.1016/j.entcs.2008.12.108", ) @inbook(PA:Mode:2005:SemiMarkovProcesses, author = "C.J. Mode", year = "2005", title = "Semi-Markov Processes", publisher = "John Wiley \& Sons, Ltd", ) @book(STOC:Norris:1997:MarkovChains, author = "J. R. Norris", year = "1997", title = "Markov Chains", publisher = "Cambridge University Press", ) @article(BIO:CANCER:Rao:2008:PSAdiscovery, author = "A.R. Rao and H.G. Motiwala and O.M.A. Karim", year = "2008", title = "The discovery of Prostate-Specific Antigen", journal = "BJU Int.", volume = "101", pages = "5--10", doi = "10.1111/j.1464-410X.2007.07138.x", ) @article(StocSkulj2009ImpreciseMC, author = "D. Skulj", year = "2009", title = "Discrete time Markov chains with interval probabilities", journal = "Int. J. Approx. Reasoning", volume = "50", number = "8", pages = "1314--1329", doi = "10.1016/j.ijar.2009.06.007", ) @article(SB:Aihara:2010:prostateRoyalSoc, author = "G. Tanaka and Y. Hirata and S.L. Goldenberg and N. Bruchovsky and K. Aihara", year = "2010", title = "Mathematical modelling of prostate cancer growth and its application to hormone therapy", journal = "Phyl Trans Royal Soc A", volume = "368", pages = "5029--5044", doi = "10.1098/rsta.2010.0221", ) @book(SB:Wilkinson:2006:StochasticModellingSB, author = "D. J. Wilkinson", year = "2006", title = "Stochastic Modelling for Systems Biology", publisher = "Chapman \& Hall", )