Rule-based Modelling and Tunable Resolution

Russ Harmer
(CNRS & Université Paris Diderot-Paris 7)

We investigate the use of an extension of rule-based modelling for cellular signalling to create a structured space of model variants. This enables the incremental development of rule sets that start from simple mechanisms and which, by a gradual increase in agent and rule resolution, evolve into more detailed descriptions.

In S. Barry Cooper and Vincent Danos: Proceedings Fifth Workshop on Developments in Computational Models — Computational Models From Nature (DCM 2009), Rhodes, Greece, 11th July 2009, Electronic Proceedings in Theoretical Computer Science 9, pp. 65–72.
Published: 15th November 2009.
ArXived at: https://dx.doi.org/10.4204/EPTCS.9.8 bibtex PDF
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