Published: 15th August 2012 DOI: 10.4204/EPTCS.92 ISSN: 2075-2180 |
Preface | |
Modelling the effect of gap junctions on tissue-level cardiac electrophysiology Doug Bruce, Pras Pathmanathan and Jonathan P. Whiteley | 1 |
Analysis of parametric biological models with non-linear dynamics Romain Testylier and Thao Dang | 16 |
A subsystems approach for parameter estimation of ODE models of hybrid systems Anastasis Georgoulas, Allan Clark, Andrea Ocone, Stephen Gilmore and Guido Sanguinetti | 30 |
A Model of the Cellular Iron Homeostasis Network Using Semi-Formal Methods for Parameter Space Exploration Nicolas Mobilia, Alexandre Donzé, Jean Marc Moulis and Éric Fanchon | 42 |
Hybrid Automata and ε-Analysis on a Neural Oscillator Alberto Casagrande, Tommaso Dreossi and Carla Piazza | 58 |
On Expressing and Monitoring Oscillatory Dynamics Petr Dluhoš, Luboš Brim and David Šafránek | 73 |
Hybrid models of the cell cycle molecular machinery Vincent Noel, Dima Grigoriev, Sergei Vakulenko and Ovidiu Radulescu | 88 |
Effects of delayed immune-response in tumor immune-system interplay Giulio Caravagna, Alex Graudenzi, Marco Antoniotti, Giancarlo Mauri and Alberto d'Onofrio | 106 |
Statistical Model Checking for Stochastic Hybrid Systems Alexandre David, Dehui Du, Kim G. Larsen, Axel Legay, Marius Mikučionis, Danny Bøgsted Poulsen and Sean Sedwards | 122 |
Towards Cancer Hybrid Automata Loes Olde Loohuis, Andreas Witzel and Bud Mishra | 137 |
Disease processes as hybrid dynamical systems Pietro Liò, Emanuela Merelli and Nicola Paoletti | 152 |
This volume contains the proceedings of the First International Workshop on Hybrid Systems and Biology (HSB 2012), that will be held in Newcastle upon Tyne, UK, on the 3rd September, 2012. HSB 2012 is a satellite event of the 23rd International Conference on Concurrency Theory (CONCUR 2012).
This workshop aims at collecting scientists working in the area of hybrid modeling applied to systems biology, in order to discuss about current achieved goals, current challenges and future possible developments.
In particular, the workshop focused on:
hybrid models of biological systems (case studies of genetic, cellular networks, models of tissues, etc.);
models of biological systems with hybrid behavior;
computational and mathematical analysis techniques for hybrid systems (i.e. reachability, model checking, abstract interpretation, bifurcation theory for hybrid dynamical systems, stability analysis, etc.), with applications in Systems Biology;
hybrid system identification techniques;
efficient simulation techniques for hybrid systems;
hybrid modeling languages for biology systems;
hybrid systems coping with incomplete and uncertain information;
hierarchical simulation (stochastic/deterministic) methods for biological systems;
abstraction and approximation techniques;
hybrid systems modeling for synthetic biology;
hybrid control of biological systems;
sensitivity analysis for hybrid systems;
behaviour-driven parameters identification for hybrid systems;
analysis and simulation tools.
The workshop programme included the keynote presentation of Radu Grosu (Vienna University of Technology, Austria). Furthermore, 11 regular papers were selected out of 20 submissions by the Program Committee of HSB 2012, which comprised of:
Marco Antoniotti, University of Milano Bicocca, Italy
Ezio Bartocci (co-chair), TU Wien, Austria
Gregory Batt, INRIA Paris-Rocquencourt, France
Luca Bortolussi (co-chair), Univerity of Trieste, Italy
Alberto Casagrande, University of Trieste, Italy
Edmund Clarke, Carnegie Mellon, USA
Thao Dang, VERIMAG Lab, Grenoble, France
Alexandre Donzé, UC Berkley, USA
James R. Faeder, University of Pittsburgh, USA
Jasmin Fisher, Microsoft Research, Cambridge, UK
Vashti Galpin, University of Edinburgh, UK
Colas Le Guernic, DGA-MI, France
Oded Maler, VERIMAG Lab, Grenoble, France
Emanuela Merelli, University of Camerino, Italy
Bud Mishra, NYU, USA
Carla Piazza, University of Udine, Italy
Alberto Policriti, University of Udine, Italy
Scott A. Smolka, University of Stony Brook, USA
Gouhei Tanaka, University of Tokyo, Japan
Verena Wolf, Saarland University, Germany
Paolo Zuliani, Carnegie Mellon, USA
All regular papers were reviewed by at least three reviewers. After the workshop, the authors of regular papers were asked to submit a revised version, incorporating the comments made during the discussion at the workshop, which are included in this volume.
We would like to thank the CONCUR organisers and furthermore all the authors, the invited speaker, the programme committee and the external referees for their valuable contributions.
August 2012
Ezio Bartocci and Luca Bortolussi
Program Co-chairs